Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34470 471 / 3e-170 PSKF109, UREG urease accessory protein G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040876 [exp] 120 / 2e-34 AT2G34470 114 / 3e-32 urease accessory protein G (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243500 [exp] 472 / 3e-170 AT2G34470 463 / 7e-167 urease accessory protein G (.1.2) Potri.002G243700 [exp] 471 / 9e-170 AT2G34470 462 / 2e-166 urease accessory protein G (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02492 [flax] [poplar] cobW CobW/HypB/UreG, nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004922 pacid=23177752 polypeptide=Lus10004922 locus=Lus10004922.g ID=Lus10004922.BGIv1.0 annot-version=v1.0 ATGGCTTCTCACGATGATCACCACCACCACCACGAACACGACCATGAACACCACCACCACCACCACCACCACCATCAGGAGACGGCGAAGGAAGAAGGTG GTTCGTGGGTGGGATCAGACGGGAAAGTATACCACAGCCACGACGGGCTAGCACCCCATTCCCACGAACCAATTTACTCCCCAGGATACTTCAGCAGGAG GGCTCCTCCTATTCTCTCTAGGGATTTCAATGACAGAGCTTTCACCATCGGTATTGGCGGCCCTGTTGGCACTGGCAAGACAGCTCTGATGCTGGCCATT TGCAAGTTCTTGAGGGACAAGTACAGCCTTGCTGCGGTGACGAATGATATATTCACTAAAGAGGACGGAGAATTCTTGATCAAGAACGGAGCTTTACCCG AGGAGAGGATCCGAGCTGTCGAAACCGGAGGGTGTCCTCACGCAGCTATTCGCGAGGACATCAGCATCAATCTCGGTCCTCTCGAGGAGCTTTCCAAGAT GTTCAAAGCAGACGTCCTTCTCTGTGAATCCGGTGGAGATAATTTAGCTGCCAACTTCAGCAGGGAGCTTGCGGACTACATCATATACATCATTGATGTA TCTGCTGGGGATAAGATTCCTAGGAAAGGCGGTCCCGGGATCACTCAGGCCGATCTCCTTGTAATAAACAAGACTGACCTTGCACCAGCAGTTGGAGCAG ACTTGGGAGTCATGGAGCGTGATGCACTACGAATGCGCGATGGAGGACCCTTCGTTTTCGCTCAGGTGAAGCATGGAGTGGGTGTGGATGAAATCGTGAA CCACATCTTACAAGCTTGGGAAGCAGCAACTGGCAACAAGCGCCATTGA
AA sequence Show only first row Show all	>Lus10004922 pacid=23177752 polypeptide=Lus10004922 locus=Lus10004922.g ID=Lus10004922.BGIv1.0 annot-version=v1.0 MASHDDHHHHHEHDHEHHHHHHHHHQETAKEEGGSWVGSDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRDFNDRAFTIGIGGPVGTGKTALMLAI CKFLRDKYSLAAVTNDIFTKEDGEFLIKNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSKMFKADVLLCESGGDNLAANFSRELADYIIYIIDV SAGDKIPRKGGPGITQADLLVINKTDLAPAVGADLGVMERDALRMRDGGPFVFAQVKHGVGVDEIVNHILQAWEAATGNKRH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	0	1
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	2.8	0.9345
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	4.5	0.9287
AT3G52230			unknown protein		Lus10028838 [exp]	6.3	0.9216
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	6.9	0.9058
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	7.9	0.9345
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008958 [exp]	8.1	0.9228
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10031093 [exp]	8.1	0.9160
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10015782 [exp]	8.3	0.9072
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10017021 [exp]	8.7	0.9132
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	10.7	0.9315

Compare expression of checked genes

Lus10004922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.