Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014359 [exp] 38 / 0.0008 AT3G18990 79 / 1e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 39 / 0.0004 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004923 pacid=23177772 polypeptide=Lus10004923 locus=Lus10004923.g ID=Lus10004923.BGIv1.0 annot-version=v1.0 ATGAAGAAACTAACTCTCTGTTGGTCTCACAGCATGTGGAGATCGGGTTTTCGGAGAAGTACATCAAGGAGCTTCGTGGAGAAGCTGTGTTCGAGCTTGC GGAGACGGGAAGAACTTGGACTGTTGGGTACGATTCCTACCTTTGCTAGGGATGCCAATCTGAAAGCTGGGGATATCTGTGCTTTCGAGCTTATGGAACT CGATCCGCTTCAACTCAAAGTGACCATCTTGCCCCCCCGGAGCCCAAACGCACCTGTCACGGGTCATCTCGCAGGGTTTTCGAGAAAGGAGAGAGTTCAA GGAGAAACATGTAGGCCTGGTTCGACAAAGAAGCAGCTAAGGTGGCTTAACGTAGGCTTTTCGGATTAG
AA sequence Show only first row Show all	>Lus10004923 pacid=23177772 polypeptide=Lus10004923 locus=Lus10004923.g ID=Lus10004923.BGIv1.0 annot-version=v1.0 MKKLTLCWSHSMWRSGFRRSTSRSFVEKLCSSLRRREELGLLGTIPTFARDANLKAGDICAFELMELDPLQLKVTILPPRSPNAPVTGHLAGFSRKERVQ GETCRPGSTKKQLRWLNVGFSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004923 [exp]	0	1
AT5G63135			unknown protein		Lus10019491 [exp]	1.7	0.8543
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10028748 [exp]	8.7	0.8631
AT3G54750			unknown protein		Lus10012287 [exp]	15.6	0.8615
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10028302 [exp]	22.6	0.7666
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10014874 [exp]	22.8	0.7653
					Lus10006316 [exp]	25.5	0.8374
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10002785 [exp]	28.0	0.7827
AT3G48710			DEK domain-containing chromati...		Lus10025759 [exp]	28.5	0.8356
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037666 [exp]	37.7	0.8381
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024646 [exp]	38.5	0.7774

Compare expression of checked genes

Lus10004923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.