Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18960 80 / 2e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 78 / 5e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 78 / 9e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 74 / 2e-15 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G34400 48 / 2e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G57720 45 / 2e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 43 / 6e-05 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040877 [exp] 89 / 7e-23 ND / Lus10039303 [exp] 91 / 3e-21 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025913 [exp] 82 / 1e-18 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10038189 [exp] 79 / 9e-18 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 78 / 2e-17 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 76 / 2e-16 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 75 / 2e-16 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 76 / 3e-16 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027543 [exp] 77 / 4e-16 AT3G18990 63 / 2e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 74 / 2e-15 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 71 / 2e-14 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 70 / 7e-14 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 69 / 1e-13 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G057101 [exp] 65 / 1e-12 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 64 / 4e-12 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 61 / 7e-11 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 60 / 1e-10 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 59 / 1e-10 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 52 / 5e-08 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10004924 pacid=23177741 polypeptide=Lus10004924 locus=Lus10004924.g ID=Lus10004924.BGIv1.0 annot-version=v1.0 ATGACGAAACAAGAAGCTGCTAATAAGATGACCAAGATCCCACAGTTCTGCAAGTTCATGAGGCTCCACACTCTCAGTTGGTTGACCATGCATATTCCGA AGTGGTTCGTGGATGAGTTCGGTGCTGAGATCACGGACACGGTGGTTCTGAAGCTCCCTAACGGGGTAACGTGGGACCTGAAGCTCTTCAGAAGTGGTCG AAGGATCTGGTTCAACGAAGGATGGGTAGACTTCTCCAAGTTCTACTCCTTGAGATACGGCTCCTTCCTGATTTTCCAGTACACTGGGGACAGGAGCAGC TTCCTGGTGACGATATTCAAACCCAACGGTTCAGAAACTCGATATCCCCCTCGCAACTTGGCCAACGGATTGAACGCTGGGCTTGAAGCAGATCCGGCTC CCAATGTAGCCAACGGTTCAAGCGCTGATCGTGCTTTCGAAATCGAGGATGACGAGGATGAAGAAGATCCTGCTGGAAATGATGTGGAAACCGAGGAGAA TGAAGATGAAGATTGGGTTCCCGAATCGAGGCGATCGATCCCAGAGCAGTGCGGGAGAGAGCTAGAGTGGTTGGTAAAGTCAAGGATGCTTTTGGAACTG ATAAGCCTTACTTCATGA
AA sequence Show only first row Show all	>Lus10004924 pacid=23177741 polypeptide=Lus10004924 locus=Lus10004924.g ID=Lus10004924.BGIv1.0 annot-version=v1.0 MTKQEAANKMTKIPQFCKFMRLHTLSWLTMHIPKWFVDEFGAEITDTVVLKLPNGVTWDLKLFRSGRRIWFNEGWVDFSKFYSLRYGSFLIFQYTGDRSS FLVTIFKPNGSETRYPPRNLANGLNAGLEADPAPNVANGSSADRAFEIEDDEDEEDPAGNDVETEENEDEDWVPESRRSIPEQCGRELEWLVKSRMLLEL ISLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10004924 [exp]	0	1
AT1G47530			MATE efflux family protein (.1...		Lus10016296 [exp]	13.7	0.7076
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012516 [exp]	18.1	0.6964
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	28.7	0.6633
					Lus10012564 [exp]	37.7	0.6628
AT4G35980			unknown protein		Lus10042598 [exp]	41.8	0.6587
					Lus10007507 [exp]	43.7	0.6609
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10040738 [exp]	45.9	0.6409
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	51.5	0.6555
					Lus10030789 [exp]	56.6	0.6477
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020083 [exp]	58.3	0.6523

Compare expression of checked genes

Lus10004924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.