Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29950 65 / 2e-12 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G67110 42 / 0.0002 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040879 [exp] 284 / 9e-97 AT1G29950 130 / 2e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10004927 [exp] 281 / 2e-94 AT1G29950 126 / 6e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G080000 [exp] 161 / 3e-49 AT1G29950 140 / 8e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.017G048000 [exp] 48 / 2e-06 AT5G09460 106 / 7e-26 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.007G112800 [exp] 47 / 7e-06 AT5G09460 114 / 1e-28 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.002G103300 [exp] 43 / 0.0001 AT5G50010 98 / 4e-23 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.005G158100 [exp] 41 / 0.0005 AT5G50010 130 / 4e-35 sequence-specific DNA binding transcription factors;transcription regulators (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004926 pacid=23177767 polypeptide=Lus10004926 locus=Lus10004926.g ID=Lus10004926.BGIv1.0 annot-version=v1.0 ATGCATAGAGATCAAAGGTTCCACCCAAAGGCAGTGCCCCCAGGTGCCTATCAATGGGGTGATAACTACATGAATCTTCCGGTTCCATCTTCCTTTCCCG AGGTGCTACCTCCACCAATATATGGTGTTGAATTTCAGCCATCTGAGGCCTGCCCGAAGAATTTCGTGATTGTCGATCAGACAGATCACCGCAGCCAAAT CATGTTCAATCCTGCATTTGCGCACAAATTCCCTGCTACCAATTTCAATGGTTATTCCTCTGGGTTCATGCACGAGAGCTATCCGAGGAAAGATGTCCGT AAGGTAGAAAAAGAATTGTCAGACCTGAAGGAAGATTCTGATGACATTGATGCACTGTTAAGCCTGGATGACATTCGTGACAACGACGAGGAGGATGGAG TCTACGACGAAGATGAGGTGAGCACAGCCAGGACATATGGAACTTACGGGAGCAGCTCCCCAGAATCTTGTTCCAACTACAACTACAACAATTCCAGGAG CAATGCTTGCTCGTCTTCTTCTGCCCATGGAAGTAGCAGTGAGACGAAACAGCTGAAGATGAAGAGGATGTTGAAGGCACTGAGGGGCATCATTCCCGGC GCGGACCAAATGAATACTGTAACTGTTATAGATGAAGCAATCAGGTACCTCAAATCTATCAAGGTCGAAGCCGAGAAGCTCGGAGTAGCGAATATGGAAG ACTACAACTAA
AA sequence Show only first row Show all	>Lus10004926 pacid=23177767 polypeptide=Lus10004926 locus=Lus10004926.g ID=Lus10004926.BGIv1.0 annot-version=v1.0 MHRDQRFHPKAVPPGAYQWGDNYMNLPVPSSFPEVLPPPIYGVEFQPSEACPKNFVIVDQTDHRSQIMFNPAFAHKFPATNFNGYSSGFMHESYPRKDVR KVEKELSDLKEDSDDIDALLSLDDIRDNDEEDGVYDEDEVSTARTYGTYGSSSPESCSNYNYNNSRSNACSSSSAHGSSSETKQLKMKRMLKALRGIIPG ADQMNTVTVIDEAIRYLKSIKVEAEKLGVANMEDYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	0	1
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	1.0	0.9541
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10036167 [exp]	1.4	0.9141
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	4.6	0.8997
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	4.9	0.8943
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	5.0	0.8933
AT2G19580		TET2	tetraspanin2 (.1)		Lus10040551 [exp]	5.7	0.8737
AT1G49470			Family of unknown function (DU...		Lus10023842 [exp]	5.8	0.8708
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	6.9	0.8879
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	8.4	0.8871
AT3G43660			Vacuolar iron transporter (VIT...		Lus10028596 [exp]	9.0	0.8612

Compare expression of checked genes

Lus10004926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.