Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29950 62 / 8e-11 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040879 [exp] 342 / 8e-118 AT1G29950 130 / 2e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10004926 [exp] 244 / 1e-79 AT1G29950 130 / 4e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G080000 [exp] 135 / 1e-37 AT1G29950 140 / 8e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G080100 [exp] 39 / 0.0002 AT1G29951 53 / 1e-11 conserved peptide upstream open reading frame 35 (.1) Potri.007G112800 [exp] 43 / 0.0003 AT5G09460 114 / 1e-28 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.017G048000 [exp] 42 / 0.0004 AT5G09460 106 / 7e-26 sequence-specific DNA binding transcription factors;transcription regulators (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004927 pacid=23177756 polypeptide=Lus10004927 locus=Lus10004927.g ID=Lus10004927.BGIv1.0 annot-version=v1.0 ATGATCTTGTTCCGTATAGCTCTTCTTTATTCCATTTCTCTGTTGAATTTGCAAGGATCGCCTTCTGCTTTCGCTGACTTCGTCGCTGTGCAAATTTCGG CGATCGTTGATTCGCTTGGTTGCTTTGGTGTTTCCAGCTTCTTCTGCAGTGAAGACTGCCGCTATCGGTTAATTTTGGATCAGGAGAAGAAACAACATGC CGTGGACATCTTCTTTCGTCAACTACAGCAGTACCTCTGTTCGATTGGTGGTGTTCTTCCGTGTCATTCTGTAAATTCGGTTTCCGCTCTGCACTGGGCA AAGAGCCTCAGAGAACAGAAGGAAATAGGGAAGACTAATATGATTGTTGGGGCTGTTGCGTATTACCGAGTGATGCAAATTTGTCAGAGAAACCGGTTTC TGATGCATAGAGATCAAAGGTTCCACCCAAAGGCAGTGCCCCCAGTTGCCTATCAAGCGGGTGATAACTACACGAATTTTCTGGTTCCATCTTCCTTTCC TGAGGTGCTACCTCCACCAATCTATGGTGTTGAATTTCAGCCATCCGAGGCCTGCCCGGAGAATTTCGTGATTGTGGATCAGACAGATCACCGCAGCCAA ATCATGTTCAATCCTGCATTTGCTCACAAATTCCCTGGTCCCAACTTCAATGGTTTAGGTTCCTCAAGGTTCATGCACGACAGCTTTCCGAGGAAAGATG TCCTCAAGTTAGAAAAAGAATTGTCAGTCCTGAAGGAAGATTCTGATGATATTGATGCATTGTTGAGCCTGGATGACATTCGTGACAATGACGAGGACGA AGATGAAGATGAGATGAGCACAGCCAGGACATGTGGAACTTATGGGAGCAGCACCCCGGAATCCTGTTCCAACTACAACTACAACAGCGCTTGCTCGTCT TCTGCTCAAAAGTCCTCCGGTGGAAGTAGCGGCGAGAAGAAACAGCTGAAGATGAAGAAGATGGTTAAGGCTCTGAGGGGCATCGTTCCTGGTGCGGACC ATATGAATACCGTAACTGTTATAGATGAAGCAGTCAGGTACCTCAAATCTCTCAAGGTTGAAGCCGAGAAGCTTGGAGTACGGAATTTGGAAGACTAA
AA sequence Show only first row Show all	>Lus10004927 pacid=23177756 polypeptide=Lus10004927 locus=Lus10004927.g ID=Lus10004927.BGIv1.0 annot-version=v1.0 MILFRIALLYSISLLNLQGSPSAFADFVAVQISAIVDSLGCFGVSSFFCSEDCRYRLILDQEKKQHAVDIFFRQLQQYLCSIGGVLPCHSVNSVSALHWA KSLREQKEIGKTNMIVGAVAYYRVMQICQRNRFLMHRDQRFHPKAVPPVAYQAGDNYTNFLVPSSFPEVLPPPIYGVEFQPSEACPENFVIVDQTDHRSQ IMFNPAFAHKFPGPNFNGLGSSRFMHDSFPRKDVLKLEKELSVLKEDSDDIDALLSLDDIRDNDEDEDEDEMSTARTCGTYGSSTPESCSNYNYNSACSS SAQKSSGGSSGEKKQLKMKKMVKALRGIVPGADHMNTVTVIDEAVRYLKSLKVEAEKLGVRNLED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004927 [exp]	0	1
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020100 [exp]	3.6	0.8937
AT3G16940	CAMTA		calmodulin binding;transcripti...		Lus10016873 [exp]	4.7	0.8556
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	7.9	0.8826
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10028695 [exp]	10.8	0.8743
AT1G07220			Arabidopsis thaliana protein o...		Lus10040665 [exp]	12.5	0.8542
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	13.0	0.8727
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10032719 [exp]	13.0	0.8632
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10012160 [exp]	15.0	0.8669
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	15.0	0.8624
AT5G22090			Protein of unknown function (D...		Lus10004098 [exp]	15.3	0.8388

Compare expression of checked genes

Lus10004927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.