Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40925 39 / 0.0005 F-box and associated interaction domains-containing protein (.1) AT3G52320 39 / 0.0007 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007302 [exp] 219 / 1e-70 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10016522 [exp] 219 / 4e-68 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10013987 [exp] 209 / 8e-64 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10040838 [exp] 201 / 1e-62 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10013986 [exp] 198 / 3e-61 ND 55 / 7e-08 Lus10003349 [exp] 190 / 2e-57 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10002769 [exp] 179 / 5e-57 AT1G15680 64 / 2e-11 F-box family protein (.1) Lus10040816 [exp] 154 / 4e-45 ND / Lus10028293 [exp] 119 / 2e-34 AT4G22430 45 / 7e-06 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 66 / 5e-13 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 50 / 1e-07 AT3G15910 58 / 5e-09 unknown protein Potri.010G254000 [exp] 40 / 0.0003 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.013G067800 [exp] 40 / 0.0003 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.013G065500 [exp] 39 / 0.001 AT5G07610 155 / 6e-43 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004928 pacid=23177732 polypeptide=Lus10004928 locus=Lus10004928.g ID=Lus10004928.BGIv1.0 annot-version=v1.0 ATGGCGATCGAGAGCTGCATCTCCGATTGGGATGTACCGCTAAGAGAATTCCGTCGCCGTCTTAGAAAACGACAACGAATCAGTTCACAAGCAAACATGA AGACGATCAGCGAATTGGGAACCGATCTTCTTGTAGAGATTCTGATCCGCCTCCCCAACCCTAGATCCGTCTGCCACTGTAAACTCGTCTACAAGCGGTG GTACTACCTGATCTTCAATCCTGCCTTCAACCGCCGTTTCATTTTTCACAATCAGACCATGAACCGCCCACATATGCCGCTGGATCCATATGAGCTGCAA TCGATCATCCTCAGCTTTCTCTCTACTCCCATACCGCGTTGTCTCAGAGTTTTGGATTGCAACGGGGACTTGGTTTTATGCGGATTATGGGATGTAGATT GCGACGATGGGGAACGTGGCAGAACGTACTTGGTCTGCAATCCATTTACGAAGCAGTGGATGGCTCTTCCTTAA
AA sequence Show only first row Show all	>Lus10004928 pacid=23177732 polypeptide=Lus10004928 locus=Lus10004928.g ID=Lus10004928.BGIv1.0 annot-version=v1.0 MAIESCISDWDVPLREFRRRLRKRQRISSQANMKTISELGTDLLVEILIRLPNPRSVCHCKLVYKRWYYLIFNPAFNRRFIFHNQTMNRPHMPLDPYELQ SIILSFLSTPIPRCLRVLDCNGDLVLCGLWDVDCDDGERGRTYLVCNPFTKQWMALP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004928 [exp]	0	1
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	13.1	0.7413
AT1G77500			Protein of unknown function (D...		Lus10042723 [exp]	13.4	0.7553
AT1G21740			Protein of unknown function (D...		Lus10042722 [exp]	29.7	0.7052
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004119 [exp]	41.9	0.7009
AT3G13800			Metallo-hydrolase/oxidoreducta...		Lus10004844 [exp]	44.5	0.6566
AT3G19780			unknown protein		Lus10040970 [exp]	62.4	0.6822
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Lus10001251 [exp]	74.0	0.6433
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10043195 [exp]	74.1	0.6658
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Lus10006654 [exp]	86.3	0.6648
AT3G56690		CIP111	Cam interacting protein 111 (....		Lus10020255 [exp]	96.2	0.6550

Compare expression of checked genes

Lus10004928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.