Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003349 [exp] 482 / 2e-166 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10013907 [exp] 452 / 5e-159 ND / Lus10013987 [exp] 438 / 2e-147 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10013986 [exp] 423 / 9e-145 ND 55 / 7e-08 Lus10007302 [exp] 406 / 1e-139 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10007303 [exp] 401 / 3e-139 AT3G23950 45 / 6e-05 F-box family protein (.1) Lus10040838 [exp] 398 / 2e-135 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10040816 [exp] 318 / 7e-105 ND / Lus10016522 [exp] 236 / 7e-71 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000700 [exp] 42 / 0.0006 AT3G15910 58 / 5e-09 unknown protein Potri.005G043500 [exp] 41 / 0.001 AT5G07610 135 / 7e-36 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004929 pacid=23177739 polypeptide=Lus10004929 locus=Lus10004929.g ID=Lus10004929.BGIv1.0 annot-version=v1.0 ATGCATGTGGGTTATGTATCACCGGTCGCAAGGTTAGTTTGTGAATCCCGAAATTTTAATAAGCTTGATCTAGGAGATGAGCAAGCATTTGTTTATTCTG AGTATCGCTTCCGTGTGGTTTGTATTTATCAAGTCGCTGCACCAATGGTTGCTATAAAGCTAGACGTGTTTTGTTCCGAGTCTGGACAATGGACCAAAGA AGCTTTTGTCTCTGCTAATTTACATGTTAAAAGAGGAATAAAATGTGTAATTTCGTGCAATGGGGAGTTGTTTTGGAAGTATTCTATGATTGGTTCCCAA CCTCGGGATTCTTCGGTGGCTGTGTTTAACCCTTTTCGCCTAGATAAGCCTCCCACTTCCATTGATGGATCTGCATTCTGTATGTATCCACGTTGGTTTA TTTCCGGCTCACAAGGGGTGTTGCACGTAATTGCAATAGAAAATGAAACTGCACCTGTTCCTTCAAACATCTGGAGACTTGAAGAAGACCGTAAATCTTG GAGGAAACAATATGAGGGGTTGGTGAACGAGACATCAAAGTGTGGTAACTATCAAATTGAGTGCTTTTATCGACCCTTTCTGCATCCAGATAAGCCGGAG ATTGTCTTCTTCAATCCGCTTCGTTCTGAAGAAAATAGTGCTATATTGTGCTGCGACTTGAGAACAGTAGAGTTCTTCGCCAAAGTAGAAGGGAAGCCGG ATGTCTATCGCCTTCAGGTGTTCCAGCCAAGGGTTTCCTGCTGGGCTACTCCAATTCCAAGGTACGAGGCGTTACGAGGCTTGTACGATGGAAGCTACAG CTTTTGGGTTCAGAGCACCAGCTTTTTAAGTGAGATAATGCGAACTTGGGACTATTCTAATTGTGTCTGTACTAAGAACCTGGTGGTTCCGAATAGGAAG CGCAAACTTGGCGGGATGGTTATAACAGAAAGGAATCGCAAAATCCACGGAATGGTTTTAAGAGAAAGGCCGTGCAAAATCCGCAGGATGGTTATAACAG AAATGAAGCAGCCTCGTTTGCCTGATGACAAGGAAGCGGATTTGGAAGATGTTGACTCCTATTGGGCCGTTCTTCCAAGAAAACAGATCAGTGAAACGTT GGCAGAGTTCCCTCATCCTCTAGACTGGCGAATTGACGAGGACCGCGAAAAGTCTTTTTTGGCTATTATGACAAGGAAAGATTGA
AA sequence Show only first row Show all	>Lus10004929 pacid=23177739 polypeptide=Lus10004929 locus=Lus10004929.g ID=Lus10004929.BGIv1.0 annot-version=v1.0 MHVGYVSPVARLVCESRNFNKLDLGDEQAFVYSEYRFRVVCIYQVAAPMVAIKLDVFCSESGQWTKEAFVSANLHVKRGIKCVISCNGELFWKYSMIGSQ PRDSSVAVFNPFRLDKPPTSIDGSAFCMYPRWFISGSQGVLHVIAIENETAPVPSNIWRLEEDRKSWRKQYEGLVNETSKCGNYQIECFYRPFLHPDKPE IVFFNPLRSEENSAILCCDLRTVEFFAKVEGKPDVYRLQVFQPRVSCWATPIPRYEALRGLYDGSYSFWVQSTSFLSEIMRTWDYSNCVCTKNLVVPNRK RKLGGMVITERNRKIHGMVLRERPCKIRRMVITEMKQPRLPDDKEADLEDVDSYWAVLPRKQISETLAEFPHPLDWRIDEDREKSFLAIMTRKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004929 [exp]	0	1
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10033148 [exp]	40.2	0.5752
AT2G47210	MYB		myb-like transcription factor ...		Lus10003470 [exp]	61.0	0.5641
					Lus10034741 [exp]	111.6	0.5207
					Lus10021285 [exp]	224.0	0.4663

Compare expression of checked genes

Lus10004929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.