Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59090 210 / 3e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040880 [exp] 550 / 0 AT3G59090 180 / 3e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G203600 [exp] 256 / 3e-82 AT3G59090 362 / 2e-124 unknown protein Potri.002G058500 [exp] 239 / 4e-76 AT3G59090 330 / 9e-112 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06454 [flax] [poplar] DUF1084 Protein of unknown function (DUF1084)
Representative CDS sequence Show only first row Show all	>Lus10004930 pacid=23177773 polypeptide=Lus10004930 locus=Lus10004930.g ID=Lus10004930.BGIv1.0 annot-version=v1.0 ATGTCTGAAGCTTCTTCTTCGTTGTGTTGCCTCCGTCCTGGAGTGTTGGCTGTCAATGTAGGTCTTGCTTCCGTCGACGCCATTATCGCCCTGCTCTCAT TCTATCAGGTGTTTCATGTATTGATTGGTTCTTCCAATATAGGTTACTTTCTTTATTTTGCAGCAAGTCCCATAGCCTACCATAATAGATGGCTATGCTG GTCGTACTCCTGTGGCTTTATCCTTATGGCCTTCTCGAAGATTTTGTTTTCAGCAGCATTTCTTCTGCTTTTATCCTTCTGGATTGACCTTTGTCATCAG GCAGATGATGAAGATTATGAGGAAGAAGACTTCAGTTTTCATGAACCTTTGTTGGAACTGTCCCTAGAACATGGAGAGTCTCGTAGGTCATGTTTTCCTT TCCGCTCCATCCGTGTTGGAAGTCGTCAAAGGGTTGTGATTTTGGTGATTATTCTAGCATTTCTCTCAACACTGATATGTGCAGCACTATTGTGGATCGA CAAGAGCAACGACACTACTCATTCATCAATACTGGCTGTGGTTTATCAAGATATATTTGATGCAGTAATGCTAGTGCTTGGTGGAACATTGGCTTGTTAC GGCCTTATATTATGCTTGAAAATGAGACGAGTGAGATCGGAGAGAGCTGCCTCAGATATTTGGAAGGTAGCAGGATTGGCAGCTGTAGCTGTTATATGTT TCACTTCAAGTGCTATCGTTTCGTTTTTGTCTAATATTCCGGTTCTTTACAACTGGCACAACCTCGATGGAAATTGTCTTCTTACTTCTGTTCTGTTGAT ACTGTACTTCTTCATAGGTTCTTCAGTACCCTCAGCAGTTCTGTTGTGGATAATGAGAGATCTTCCACCACCTTTAGTATCTAGTGTGCCCGAAGAATCG ACAACGATTACCTTTGTTCGAGGTGATAATGCAGGAGTAATACACAATCCTCAACGCTGGACTACACCGGCAAGTTCGCCGAATCAGGTTCCAATTTCGA CCCTTTCCGGCTTTTCTGCATGCCATATAGCTAGTGAAAATCAGACACATTTGCATGATACTGAATGTGGATTGACTGGCCAGCGTGGTGAGAAGCAACG ACCTTTGCTTTCTGAAGAATCGAGGCAGCGAATCTCGGGGTCAAGAAGTTCCTCCTCATCCGGCAACAAATCCGACAACAGATTCTTGGACTAG
AA sequence Show only first row Show all	>Lus10004930 pacid=23177773 polypeptide=Lus10004930 locus=Lus10004930.g ID=Lus10004930.BGIv1.0 annot-version=v1.0 MSEASSSLCCLRPGVLAVNVGLASVDAIIALLSFYQVFHVLIGSSNIGYFLYFAASPIAYHNRWLCWSYSCGFILMAFSKILFSAAFLLLLSFWIDLCHQ ADDEDYEEEDFSFHEPLLELSLEHGESRRSCFPFRSIRVGSRQRVVILVIILAFLSTLICAALLWIDKSNDTTHSSILAVVYQDIFDAVMLVLGGTLACY GLILCLKMRRVRSERAASDIWKVAGLAAVAVICFTSSAIVSFLSNIPVLYNWHNLDGNCLLTSVLLILYFFIGSSVPSAVLLWIMRDLPPPLVSSVPEES TTITFVRGDNAGVIHNPQRWTTPASSPNQVPISTLSGFSACHIASENQTHLHDTECGLTGQRGEKQRPLLSEESRQRISGSRSSSSSGNKSDNRFLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59090			unknown protein		Lus10004930 [exp]	0	1
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10007747 [exp]	2.4	0.9017
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10037198 [exp]	6.5	0.9073
AT5G41140			Myosin heavy chain-related pro...		Lus10008012 [exp]	8.8	0.8742
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10013614 [exp]	10.2	0.8999
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	10.8	0.9072
AT3G59090			unknown protein		Lus10040880 [exp]	13.5	0.9309
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10040590 [exp]	14.7	0.9042
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008991 [exp]	18.0	0.9119
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10033289 [exp]	18.2	0.8452
AT5G27780			SAUR-like auxin-responsive pro...		Lus10023969 [exp]	19.6	0.8926

Compare expression of checked genes

Lus10004930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.