Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 569 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 523 / 3e-173 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 457 / 3e-148 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT5G41610 446 / 4e-144 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT3G17630 434 / 2e-139 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT4G23700 423 / 4e-135 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G53720 407 / 6e-129 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G64170 375 / 3e-117 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT1G06970 327 / 5e-99 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT5G22900 294 / 8e-87 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040881 [exp] 1691 / 0 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10015268 [exp] 1025 / 0 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 569 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 568 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 424 / 2e-135 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017540 [exp] 418 / 8e-133 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10039138 [exp] 407 / 6e-128 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10025322 [exp] 361 / 1e-111 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10017541 [exp] 316 / 3e-93 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131300 [exp] 816 / 0 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 580 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 475 / 1e-154 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.001G096320 [exp] 454 / 2e-147 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 454 / 3e-147 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 454 / 5e-147 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 454 / 5e-147 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G189100 [exp] 454 / 7e-147 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G102700 [exp] 437 / 9e-141 AT2G13620 525 / 3e-175 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.003G134900 [exp] 434 / 1e-139 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10004932 pacid=23177751 polypeptide=Lus10004932 locus=Lus10004932.g ID=Lus10004932.BGIv1.0 annot-version=v1.0 ATGGATATAAACGCAGAGCAGAACACGTATCTGCCGCCTGACCGTCCCGGCGTCCGATGCTTAGTCGTGAATATCACCGCCAGCAGCGGGCTATGGCAGA GCGAGAATCCCCTGACTCAAGCTCTTCCCATCCTGGCGATGCAGCTCGCCACCGTCATCTTGGTCACCCGCACCCTTCAGTTCCTCTTCAAACCCTACCA CATCCCTCAGATCGTCGCCAATATTCTGGGAGGGATTTTGGTTGGCCCGACGTTATTAAGCAAAACCAGGTATTTTCAAACAATATTTCCGATGAGGGCG ATTACGCTCGTCGAAACGGTGGCGTATTGGGCGTTGACCTGCCACGTGTTCCTCCTCGGACTGGAAACCGACGTCGCCTCCGTCCTCCGCGCCGGGAGAA AAGCGGTCCACGTCGCCGCCGTGGGCGTTCTCTTCCCACTCGCCGTCTGTAGCGGCTTATTCTTTCTGATAGACTCATCGAACCCCGAAGACAGCCGGAA TAAGTTCATATACTTCGCCGCGCCGTTAGGAATGACCGGTTTCCCGGTGGTTTCTCGGATACTCGTCGACCTGAAGCTGATCCACAGCGATCTCGGCCGA TTAGCAATGTCATGTGCTCTCGTGGAGGACTTAGTCGGATGGATTTTCGTCATCATTCTGATTCCTTACACTGTCAGCACGGCGAATATGTTCATGGCGA TACCGGCGACCGTCGCCTTCATATTGTTCTGCGTTTACGCCGTTCGTCCTGTTCTGGCTATTATAATCCGCCGCACTTCTCGTGGTAACAATATAAACGA GCACTACCTCAGCTTCATTATGGTCTCTGTTTCGTTGTTTGCCTGCAGTACGGAGATCCTCGGAACCGGGTCCCTGGTCGGAGCTTTTGTTTACGGGGTT ATAATGCCGGACAGGATCCTCGCCGGAATGCTTGCTGATAAGTTCGACGATTTCATGTCCGGATATTTGCTTCCTCTATACTTCGTCTGTTGCGGGATGA GGGTAGACTTATCCTCGGTCGCCGAGTGCGGGGTTGGAGCCATCTTCATTGTGTTACTTTCTTGCTCGCTTAAAGTAATCGGAGCTATAATCACCACCGC TAGATACAAGATCCCGCGACGAGACGCTTTTGCACTTGGAATGCTCTCCAACACTAAAGGCATCTTGGCCTTGTTCATCGCAAACCTCGCCGTTGATCTA AACGCAACCGTACGTGAATTTTCTACTCTGGTCCTCTGCCTTATGATCATGACAGCTATATCCGGTCCGGTAGTGGCTAACATGTACCGGCCAGCCAAGC GTCTGTCACATTACAAGCAGAGGACAATCCAGCAAGGAACCCCAGACTCCGAACTCAGAATCCTAGCATGCTTCCACGGCCCTTACAACATATCAGGAAT GATCAACCTCTTCGATTCCTCGGCAACAACGAAAGACTCCACTCTCAACGTCTTCGCCCTCCACCTCGTCGAACTCACCGGCCGAGCCTCAGCAATGCTG ATAGTTCACACCCCGGGGAAAGGCCGGGGCCACAAGGATGCCAACTCTGAACAGATAGTCACCGCATTGGAGACTTTCGCCAGCCTCAACGACTCGATCG AAGTCCGCCCACTGACCGCACTGTCACCGTTCATCACAATGCACGACGACATCTGTAGTCTGGCCGAGGACAAGAAGGTAACTTTCGTGATCTTGCCCTT CCACAAGCCTCCGACTCGAGACGGGAAGCTTGACGAAGAAGGTGGGAGCACCTCATTTCGAGGCGTTAACCTCAACGTCCTTGGGAATGCCCCTTGCACC GTTGGCATATTTGTGGATAAAGGATACGGAGAGAGCACAAACGACGATGACGATGATGCCTGCAGGAAGCGTCAGGTGGCATTGCTCTTCTTCGGTGGAC CTGACGATCGGGAAGGTCTGTGTTACGCTTCGAGGATGGCAGCAAGCGGGGTAGTGCATCTTCATGTCGTTAGGTTCCAGCCGAGCATCGATTTGAATCA ACATATCCACGGAATGGAGATCCCAGGAGGAGGCGGAGGAGGAGACGAATACGGCGGGCTGGTAACCGCATCAGCATACATAGAAAGGCAGAAAAAGCTA GACGAGATGTGCATCAACGATTTCAGGCTAAGAACAGCAGGACATGAAACGATGTTCTTCAAAGAGAAGCGCGTGAGCGGCGAAGAAGAAGTGGTCTCCA CGCTCAAGGAAATGGCCAGGACCTTACGAATCGACCTCTTTGTAGTCGGCAAAGGGGAAGGAATGCTACAGCCGCTTACAGCAGCACTCGTCGACTGGTG CGAGTACCCCGAACTAGGACCCGTTGGGGACGCACTGGCGACCATGAACGACTCGCGAAGCTCGGTCCTTGTGGTGCAGCGGTACATTGGACCGGAGGAG GACGACGAGGAAGGCGGGGCACGCCATGAACACGCGGTGGATGTCGACGAAGCTGCCTCGGGGCATTCGAGGGAGCATCTGGGGAAATGGCAGGCCCCTG GTGATGATTCCGAGCATGGTAGTAGTAGCCTTGAGATGCAGGCGTTTGCCAAGCGTAAGCGTGACGATGGGATCGATGATTTCAAATCTGGATACTGA
AA sequence Show only first row Show all	>Lus10004932 pacid=23177751 polypeptide=Lus10004932 locus=Lus10004932.g ID=Lus10004932.BGIv1.0 annot-version=v1.0 MDINAEQNTYLPPDRPGVRCLVVNITASSGLWQSENPLTQALPILAMQLATVILVTRTLQFLFKPYHIPQIVANILGGILVGPTLLSKTRYFQTIFPMRA ITLVETVAYWALTCHVFLLGLETDVASVLRAGRKAVHVAAVGVLFPLAVCSGLFFLIDSSNPEDSRNKFIYFAAPLGMTGFPVVSRILVDLKLIHSDLGR LAMSCALVEDLVGWIFVIILIPYTVSTANMFMAIPATVAFILFCVYAVRPVLAIIIRRTSRGNNINEHYLSFIMVSVSLFACSTEILGTGSLVGAFVYGV IMPDRILAGMLADKFDDFMSGYLLPLYFVCCGMRVDLSSVAECGVGAIFIVLLSCSLKVIGAIITTARYKIPRRDAFALGMLSNTKGILALFIANLAVDL NATVREFSTLVLCLMIMTAISGPVVANMYRPAKRLSHYKQRTIQQGTPDSELRILACFHGPYNISGMINLFDSSATTKDSTLNVFALHLVELTGRASAML IVHTPGKGRGHKDANSEQIVTALETFASLNDSIEVRPLTALSPFITMHDDICSLAEDKKVTFVILPFHKPPTRDGKLDEEGGSTSFRGVNLNVLGNAPCT VGIFVDKGYGESTNDDDDDACRKRQVALLFFGGPDDREGLCYASRMAASGVVHLHVVRFQPSIDLNQHIHGMEIPGGGGGGDEYGGLVTASAYIERQKKL DEMCINDFRLRTAGHETMFFKEKRVSGEEEVVSTLKEMARTLRIDLFVVGKGEGMLQPLTAALVDWCEYPELGPVGDALATMNDSRSSVLVVQRYIGPEE DDEEGGARHEHAVDVDEAASGHSREHLGKWQAPGDDSEHGSSSLEMQAFAKRKRDDGIDDFKSGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10004932 [exp]	0	1
AT3G19670		ATPRP40B	pre-mRNA-processing protein 40...		Lus10006142 [exp]	5.6	0.7975
AT4G35240			Protein of unknown function (D...		Lus10014445 [exp]	7.3	0.7403
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	16.4	0.7441
AT5G23250			Succinyl-CoA ligase, alpha sub...		Lus10003877 [exp]	32.4	0.7045
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	49.0	0.7201
					Lus10012802 [exp]	61.9	0.7257
AT5G52950			unknown protein		Lus10027565 [exp]	67.8	0.7194
AT5G57950			26S proteasome regulatory subu...		Lus10022151 [exp]	92.0	0.6715
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10010920 [exp]	100.8	0.6872

Compare expression of checked genes

Lus10004932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.