Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46290 173 / 3e-53 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT1G74960 87 / 1e-20 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040883 [exp] 202 / 1e-63 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10025390 [exp] 174 / 3e-53 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10015267 [exp] 175 / 2e-51 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10001814 [exp] 153 / 2e-44 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10003195 [exp] 152 / 2e-44 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10033422 [exp] 96 / 1e-23 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10034886 [exp] 96 / 1e-23 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G079700 [exp] 172 / 2e-52 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.004G131500 [exp] 170 / 1e-51 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.003G142000 [exp] 153 / 5e-45 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.001G088700 [exp] 152 / 1e-44 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.018G062900 [exp] 87 / 2e-20 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.006G138000 [exp] 82 / 8e-19 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF00109 [flax] [poplar] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004934 pacid=23177763 polypeptide=Lus10004934 locus=Lus10004934.g ID=Lus10004934.BGIv1.0 annot-version=v1.0 ATGCAAGCTCTCCAATCCTTGCACTCCCCTTCCCTCCGCCCCCTCCACCGCAACCAACCCACCAGCCCAACCCGACCCACATTCTCCTCATCCGCCTCCG CCAGGAGGAGAACAACTCCACCCATCATCACCGCCGCCGCCAACAATGCCACCGTTGCAGCCCCCAAGCGGGAGACGGACCCGAAGAAGCGAGTCGTAAT CACGGGCATGGGCCTGGTTTCCGTGTTCGGAAACGACGTCGACGCCTACTACGACAAGCTGCTCTCCGGGGAGAGCGGGATCACTCTCATCGACCGGTTC GACGCTTCCAAATTCCCCACCCGGTTCGCCGGCCAGATCCGCGGATTCGCTGCTCAGCGCTACATTGATGGCAAGAACGATAGGAGGCTCGAAGATTGCT TGAGGTATTGCATTGTGGCTGGGAAGAAGGCCCTCTAG
AA sequence Show only first row Show all	>Lus10004934 pacid=23177763 polypeptide=Lus10004934 locus=Lus10004934.g ID=Lus10004934.BGIv1.0 annot-version=v1.0 MQALQSLHSPSLRPLHRNQPTSPTRPTFSSSASARRRTTPPIITAAANNATVAAPKRETDPKKRVVITGMGLVSVFGNDVDAYYDKLLSGESGITLIDRF DASKFPTRFAGQIRGFAAQRYIDGKNDRRLEDCLRYCIVAGKKAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004934 [exp]	0	1
AT2G44640			unknown protein		Lus10019499 [exp]	1.7	0.9252
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10034315 [exp]	2.0	0.9236
AT5G62170			unknown protein		Lus10027402 [exp]	3.5	0.8975
AT5G41460			Protein of unknown function (D...		Lus10028768 [exp]	4.6	0.8798
AT2G44640			unknown protein		Lus10043347 [exp]	5.7	0.9043
AT1G24090			RNase H family protein (.1)		Lus10033508 [exp]	8.9	0.8779
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	10.7	0.8809
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004935 [exp]	10.9	0.8635
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10027967 [exp]	16.2	0.8754
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10018494 [exp]	18.7	0.7957

Compare expression of checked genes

Lus10004934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.