Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34460 369 / 3e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G18890 107 / 9e-26 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G31530 76 / 1e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37660 64 / 2e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18660 52 / 3e-07 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02240 51 / 3e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G46780 49 / 2e-06 PTAC16 plastid transcriptionally active 16 (.1) AT2G33590 48 / 4e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G18810 48 / 5e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 44 / 0.0001 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040884 [exp] 435 / 8e-155 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 115 / 1e-28 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026321 [exp] 112 / 1e-27 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022420 [exp] 71 / 2e-13 AT4G31530 415 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10009715 [exp] 64 / 2e-11 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024383 [exp] 56 / 9e-09 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010846 [exp] 55 / 3e-08 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016502 [exp] 53 / 1e-07 AT3G46780 533 / 0.0 plastid transcriptionally active 16 (.1) Lus10037912 [exp] 52 / 3e-07 AT5G18660 577 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G079600 [exp] 369 / 1e-128 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G150300 [exp] 114 / 2e-28 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 112 / 1e-27 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 112 / 1e-27 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G253900 [exp] 65 / 1e-11 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G086800 [exp] 57 / 3e-09 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244800 [exp] 56 / 1e-08 AT3G46780 513 / 7e-179 plastid transcriptionally active 16 (.1) Potri.008G204900 [exp] 55 / 2e-08 AT5G18660 610 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G037000 [exp] 54 / 4e-08 AT3G46780 503 / 2e-175 plastid transcriptionally active 16 (.1) Potri.009G057500 [exp] 49 / 2e-06 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10004936 pacid=23177762 polypeptide=Lus10004936 locus=Lus10004936.g ID=Lus10004936.BGIv1.0 annot-version=v1.0 ATGGCCACAACGCTATTGATCGCCAAGAGCTATCCTCCTCTGTCATCGTCGTGGAATTCTCTAAACCCATCCCGCCATTGCTCCTCCACAAAGAGCTTTC CTCTTCTTCTTTCCTTCCTCTCTTCCAAATCCACACCCACTTTCCCTTATAGTCCCATCAGGATGGCGGCGGCGAGCAATAGCAGCGAGATTACAGAGGA GAAGAGTAGCAGCAGCAATGTCGTGGAGAAGAAGAAGACGGTGTTTGTAGCTGGAGCAACTGGAAGCACTGGGAAAAGGATTGTGGAGCAGCTTCTCTCC AAAGGGTTTGCAGTGAAAGCTGGAGTTAGGGATGTTGACAAGGCCAAATCCGTCTTTTTCAAGGACGACAATCCATCTCTTCAGCTCGTGAAAGCTGACG TTACAGAAGGGTCAGCCAAGCTAGCAGAGGCCATAGGTGAAGATTCTGATGCTGTGATATGCGCCACCGGGTTTCGACCCGGTTGGGACCTCTTTGCTCC ATGGAAGGTTGATTACTATGGCACCATAAATCTAGTGGATGCTTGCAGGAAACAAGGTGTCGACCGGTTCGTCCTGGTCAGCTCCATTCTGGTGAACGGA GCTGCGATGGGTCAGCTACTCAACCCGGCTTACGTGTTCCTCAACATCTTCGGGCTGACATTGGTAGCGAAGCTTCAGGCTGAGGGTTATATCAGGAAGT CCGGGATTAACTACACCATTGTTAGACCCGGTGGGCTGAAGAACGATCCTCCGTCCGGAAACCTGGTCATGGAACCTGAGGATACACTTTCTGGAGGCTC GATTTCGAGAGATGTGGTGGCTGAAGTAGCGGTTGAGGCGTTGGCTTGTAAGGCATCGTCGTACAAAGTGGTGGAGATAGTATCTCGTCCTGAAGCACCG AAGCGTTCGTATGAGGATCTCTTTGGGTCCATTAAAGCTAAGTAG
AA sequence Show only first row Show all	>Lus10004936 pacid=23177762 polypeptide=Lus10004936 locus=Lus10004936.g ID=Lus10004936.BGIv1.0 annot-version=v1.0 MATTLLIAKSYPPLSSSWNSLNPSRHCSSTKSFPLLLSFLSSKSTPTFPYSPIRMAAASNSSEITEEKSSSSNVVEKKKTVFVAGATGSTGKRIVEQLLS KGFAVKAGVRDVDKAKSVFFKDDNPSLQLVKADVTEGSAKLAEAIGEDSDAVICATGFRPGWDLFAPWKVDYYGTINLVDACRKQGVDRFVLVSSILVNG AAMGQLLNPAYVFLNIFGLTLVAKLQAEGYIRKSGINYTIVRPGGLKNDPPSGNLVMEPEDTLSGGSISRDVVAEVAVEALACKASSYKVVEIVSRPEAP KRSYEDLFGSIKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34460			NAD(P)-binding Rossmann-fold s...		Lus10004936 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	6.3	0.8217
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10013629 [exp]	10.9	0.8331
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	11.2	0.8112
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10035760 [exp]	11.5	0.7949
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10011022 [exp]	11.7	0.8087
AT1G74470			Pyridine nucleotide-disulphide...		Lus10021665 [exp]	12.6	0.8419
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10023168 [exp]	13.9	0.8285
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10009147 [exp]	14.0	0.7675
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	15.6	0.8240
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10021410 [exp]	17.2	0.8049

Compare expression of checked genes

Lus10004936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.