Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02090 127 / 7e-35 MPPBETA Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040886 [exp] 174 / 2e-52 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040885 [exp] 172 / 1e-51 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004939 [exp] 170 / 6e-51 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118900 [exp] 144 / 2e-41 AT3G02090 822 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.017G092400 [exp] 144 / 2e-41 AT3G02090 832 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004937 pacid=23177758 polypeptide=Lus10004937 locus=Lus10004937.g ID=Lus10004937.BGIv1.0 annot-version=v1.0 ATGGCGTCGAAGCACATCCTCACTCTGGCTCGACGGTCGGATCACCGGATTCGATCCTCTCCGGCCATTCTCTCCGCCATTCGATCATCATCATCTTCCT CGGCTGTGGCCGAATCTCACGCTTCATCACCTCCATCTCCACCCCCGCCAAACGCCATGATTTACGATCGTCTCGCTGAATCAGTCAATTCGAAAATCAA ACAGCTCGACAATCCGGATCCCAGATTCCTCAAGTACGGATCGCCTCGGCCTACTCTGCGAAGTCACACGCACATCCTTTCTGCTCCCGAAACCCGCGTC ACCACTCTTCCCAATGGCCTTCGCGTCGCCACCGAGTCTTCACTCTCCGCGAAAACCGCCACTGTTGGTGTTTGGATTGATGCATCAGGCTTTGGATATT TTATCCGATATATTGCAGAATTCCAAGTTCGAGGAGAAACCGATTGCTAG
AA sequence Show only first row Show all	>Lus10004937 pacid=23177758 polypeptide=Lus10004937 locus=Lus10004937.g ID=Lus10004937.BGIv1.0 annot-version=v1.0 MASKHILTLARRSDHRIRSSPAILSAIRSSSSSSAVAESHASSPPSPPPPNAMIYDRLAESVNSKIKQLDNPDPRFLKYGSPRPTLRSHTHILSAPETRV TTLPNGLRVATESSLSAKTATVGVWIDASGFGYFIRYIAEFQVRGETDC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	0	1
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10022911 [exp]	2.6	0.9447
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	3.5	0.9347
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10020701 [exp]	4.7	0.9147
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	4.7	0.9439
AT1G34130		STT3B	staurosporin and temperature s...		Lus10041985 [exp]	4.9	0.9378
AT4G16180			unknown protein		Lus10037780 [exp]	6.0	0.9359
AT3G16480		MPPALPHA	mitochondrial processing pepti...		Lus10012926 [exp]	6.3	0.9326
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10025912 [exp]	6.5	0.9011
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10026039 [exp]	6.7	0.9348
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	7.7	0.9301

Compare expression of checked genes

Lus10004937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.