Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02090 815 / 0 MPPBETA Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT3G16480 176 / 1e-48 MPPALPHA mitochondrial processing peptidase alpha subunit (.1) AT1G51980 175 / 2e-48 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT1G06900 53 / 4e-07 Insulinase (Peptidase family M16) family protein (.1) AT2G41790 53 / 4e-07 Insulinase (Peptidase family M16) family protein (.1) AT3G57470 52 / 1e-06 Insulinase (Peptidase family M16) family protein (.1), Insulinase (Peptidase family M16) family protein (.2), Insulinase (Peptidase family M16) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040885 [exp] 954 / 0 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040886 [exp] 946 / 0 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004938 [exp] 620 / 0 AT3G02090 546 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10035000 [exp] 175 / 3e-48 AT1G51980 631 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10038262 [exp] 174 / 4e-48 AT1G51980 637 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10025839 [exp] 174 / 8e-48 AT1G51980 643 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004937 [exp] 160 / 6e-47 AT3G02090 151 / 6e-44 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10012926 [exp] 134 / 3e-33 AT3G16480 504 / 3e-173 mitochondrial processing peptidase alpha subunit (.1) Lus10012918 [exp] 55 / 2e-07 AT5G56730 1501 / 0.0 Insulinase (Peptidase family M16) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092400 [exp] 841 / 0 AT3G02090 832 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.004G118900 [exp] 828 / 0 AT3G02090 822 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.001G191100 [exp] 179 / 6e-50 AT1G51980 620 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.008G193200 [exp] 178 / 2e-49 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.010G036700 [exp] 162 / 9e-44 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.006G050700 [exp] 56 / 8e-08 AT2G41790 1503 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Potri.013G154600 [exp] 52 / 7e-07 AT1G06900 1461 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Potri.014G149200 [exp] 52 / 1e-06 AT5G42390 1815 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [flax] [poplar] Peptidase_ME PF00675 [flax] [poplar] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [flax] [poplar] Peptidase_ME PF05193 [flax] [poplar] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Lus10004939 pacid=23177768 polypeptide=Lus10004939 locus=Lus10004939.g ID=Lus10004939.BGIv1.0 annot-version=v1.0 ATGGCGTCAAAGCACATCCTCACTCTGGCTCGACGGTCGCATCACCGGCTTCGATCATCTCCGGCCATTCTATCCGCCATTCGATCATCATCTTCTTCCT CGGCTGTGGCCGAATCTCACGCATCACCTCCCTCTCCACCCCCGCCAAACGCCATGATTTACGATCGTCTCGCTGAATCAGTCAATTCGAAAATCAAACA GCTCGACAATCCGGATCCCAGATTCCTCAAGTACGGATCGCCTCGGCCTACTCTGCGAAGTCACACGCACATCCTCTCTGCTCCGGAAACCCGAATCACC ACTCTTCCCAATGGCCTTCGCGTCGCCACTGAGTCTTGTCTCTCTGCGAAAACCGCCACTGTTGGTGTTTGGATTGATGCCGGGTCCAGATTCGAGACGG ACGAGACCAATGGAACTGCTCACTTCTTGGAGCACATGATATTCAAGGGGACTGAGAAGAGGTCGGTTAGGGAGCTGGAAGAGGAGATCGAGAACATGGG AGGCCATTTGAATGCGTACACAAGCAGAGAGCAGACTACGTATTATGCCAAAGTTATGGACAAAAATGTTAATCAGGCTTTGGATATTTTATCTGATATA TTGCAGAATTCCAAGTTCGAGGAGAACCGGATTACTAAGGAACGAGATGTTATTTTGAGAGAAATGGAAGAGGTTGAAGGGCAGACTGAAGAAGTCATCT TTGATCACTTGCATGCCACTGCTTTCCAGTACACTCCTTTGGGTCGCACTATTCTTGGCCCCGCTAAAAATATTAAGACAATTACCAGAGATAACCTTCA GAGCTATATCAAGACACACTATACAGCTCCCAGAATGGTAATTGCTGCTTCTGGAGCTGTCAAACATGAGGATATTGTTGATCAAGCAAAGAAGCTGTTT ACCAATCTGTCATCTGAACCAACTACTGCTTCACAGTTAGTGTCAAAAGAACCTGCATTTTTCACTGGTTCTGAGGTTAGGATAATCGATGATGACCTCC CTTTGGCACAATTCGCTGTTGCTTTTGAAGGTGCTTCATGGACAGATCCCGATTCTGTAGCTCTTATGGTCGTGCAGTCTATGTTAGGTTCATGGAACAA AAGTGCTGGTGGTGGCAAGCACATGGGTTCTGAGCTAGTACAGAGGGTTAGTGTAAATGAGCTTGCTGAAAGTGTAATGACTTTCAACACTAACTACAAA GACACTGGACTGTTTGGTGTCTATGCAGTAGCAAAGCCTGAGGATTTGGATGATTTGACCTATGCAATCATGTATGAGATTGCCAAGTTGTCTTTCCGAG TTTCAGAAGATGATGTGATCCGTGCTCGAAATCAGTTGAAGTCCTCCTTGTTACTTCATATGGATGGGACTAGTCCTGTAGCTGAAGATATTGGGCGCCA GCTACTTACTTACGGACGAAGAATTCCATCAGCGGAATTATTTGCGAGGATAGATGCAGTGGATGCAAGCACCATTAAGCGTGTGGCAAATCGTTTTATT TATGACAAGGATGTTGCGATTGCTGCGATGGGTCCAATTCAAGGGTTGCGAGACTACAACTGGTTCAGACGTAGAACTTACTTCCTCCGCTACTAA
AA sequence Show only first row Show all	>Lus10004939 pacid=23177768 polypeptide=Lus10004939 locus=Lus10004939.g ID=Lus10004939.BGIv1.0 annot-version=v1.0 MASKHILTLARRSHHRLRSSPAILSAIRSSSSSSAVAESHASPPSPPPPNAMIYDRLAESVNSKIKQLDNPDPRFLKYGSPRPTLRSHTHILSAPETRIT TLPNGLRVATESCLSAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRSVRELEEEIENMGGHLNAYTSREQTTYYAKVMDKNVNQALDILSDI LQNSKFEENRITKERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAKNIKTITRDNLQSYIKTHYTAPRMVIAASGAVKHEDIVDQAKKLF TNLSSEPTTASQLVSKEPAFFTGSEVRIIDDDLPLAQFAVAFEGASWTDPDSVALMVVQSMLGSWNKSAGGGKHMGSELVQRVSVNELAESVMTFNTNYK DTGLFGVYAVAKPEDLDDLTYAIMYEIAKLSFRVSEDDVIRARNQLKSSLLLHMDGTSPVAEDIGRQLLTYGRRIPSAELFARIDAVDASTIKRVANRFI YDKDVAIAAMGPIQGLRDYNWFRRRTYFLRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004939 [exp]	0	1
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10037617 [exp]	2.0	0.8852
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10011467 [exp]	5.7	0.8894
AT5G45160			Root hair defective 3 GTP-bind...		Lus10040630 [exp]	6.2	0.8341
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	7.2	0.8695
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	9.5	0.8805
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	14.8	0.8654
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	16.9	0.8395
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002569 [exp]	18.5	0.8491
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10038484 [exp]	20.5	0.8297
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10004702 [exp]	20.8	0.8475

Compare expression of checked genes

Lus10004939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.