Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68140 309 / 3e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT4G08460 224 / 1e-71 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G77770 200 / 2e-62 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G24740 199 / 7e-61 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT4G31410 155 / 1e-44 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 124 / 3e-33 Protein of unknown function (DUF1644) (.1) AT1G15430 123 / 4e-33 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G25910 101 / 7e-24 Protein of unknown function (DUF1644) (.1) AT2G26050 89 / 1e-20 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020957 [exp] 562 / 0 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10025356 [exp] 439 / 7e-157 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10009772 [exp] 236 / 2e-76 AT4G08460 256 / 3e-85 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10024758 [exp] 231 / 5e-74 AT4G08460 251 / 8e-83 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10022809 [exp] 193 / 6e-59 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10011876 [exp] 194 / 4e-58 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10019436 [exp] 179 / 2e-53 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1) Lus10043292 [exp] 177 / 8e-53 AT3G25910 282 / 2e-93 Protein of unknown function (DUF1644) (.1) Lus10020151 [exp] 168 / 1e-49 AT4G31410 363 / 1e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G021800 [exp] 410 / 2e-143 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.001G208800 [exp] 399 / 9e-140 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.002G088700 [exp] 259 / 1e-84 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.005G172300 [exp] 236 / 5e-76 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.006G154300 [exp] 182 / 1e-54 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.018G070500 [exp] 180 / 1e-53 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.002G216600 [exp] 174 / 2e-51 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.003G060800 [exp] 169 / 3e-48 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1) Potri.018G006400 [exp] 165 / 5e-48 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G275400 [exp] 163 / 1e-47 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF07800 [flax] [poplar] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Lus10004940 pacid=23177736 polypeptide=Lus10004940 locus=Lus10004940.g ID=Lus10004940.BGIv1.0 annot-version=v1.0 ATGGCCAGATCACGAAGAAGAACTTCTTTCAGACAGTATAGGATGGCTCCTTACCAATTGCCAACATGTGACAGGCACATGCCAGAAGAATTATGTCCAA CTAAAGGCTCCAGATGCTTAGATAAGAATGATTGGGAACATGCAACTTGCTCAGTGTGCATGGAGTGTCCACATAATGCAGTTCTGTTGCTCTGCTCCTC CCATGATAAGGGGTGCCGTCCCTATATGTGTGGTACTAGTTTCCGTTACTCCAATTGTCTTGACCAATACAAGAAGGCATACACGAAAGTCGTCTCCTCG AGCGGGAATGGTGATAATCCATTTTCCGTATCAGACTCGAGTTGGCATGTTGAGAAGTGTGAAGTCTCAGAACTTGCTTGCCCTCTTTGCAGAGGCCAAG TGAAAGGATGGACTGTGGTCGAGCCTGCACGAGAATATCTGAATGATAAGACAAGAAGCTGCATGCAAGATGAATGCTCATTTGTTGGAACTTACAAAGA ATTAAGAAAGCACATGAAGGGGGTTCATCCTTGTGCAAGGCCACGTGAAACTGATCCTACACTGGAACAGAAATGGCGAAGGCTGGAAGGTGAGCGGGAG CATGATGATGTGATCAGCACAATACGGTCCACAATGCCTGGATCGTTGGTCTTTGGGGATTATGTGATTGAGGGAAACCATCAGGATCTTGATAGTGATG ATGAGGATAGTGCTTTTGAAGCAGATGGGATAGAAAGGAGCGGAGGGTTTCCAGGTTTGGATAGGAACTTTATGAATGTCTTCCTTCTGTTGCATGCCTT TGGGTCATCAGGTGATGAGTTTAGCCGACGGATTAGACAGCCAGAAGAGGGAGGTAGTGGTGGTGCCATGCGACACACTTCTCCAGTTGGTGGATTGGCA TCCTCTGATGAACAAGTAGGACATCATCATGCAGACAATAATGGTGGTGTATCTCTTGTTTCTCGACTCCGGCGGGAGGGGCAGGTGCTCTTGAACCGTT CAGGGAGAAGGCGTAGGCGTAGGGTGGGTAATGGAGGGGACTGA
AA sequence Show only first row Show all	>Lus10004940 pacid=23177736 polypeptide=Lus10004940 locus=Lus10004940.g ID=Lus10004940.BGIv1.0 annot-version=v1.0 MARSRRRTSFRQYRMAPYQLPTCDRHMPEELCPTKGSRCLDKNDWEHATCSVCMECPHNAVLLLCSSHDKGCRPYMCGTSFRYSNCLDQYKKAYTKVVSS SGNGDNPFSVSDSSWHVEKCEVSELACPLCRGQVKGWTVVEPAREYLNDKTRSCMQDECSFVGTYKELRKHMKGVHPCARPRETDPTLEQKWRRLEGERE HDDVISTIRSTMPGSLVFGDYVIEGNHQDLDSDDEDSAFEADGIERSGGFPGLDRNFMNVFLLLHAFGSSGDEFSRRIRQPEEGGSGGAMRHTSPVGGLA SSDEQVGHHHADNNGGVSLVSRLRREGQVLLNRSGRRRRRRVGNGGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68140			Protein of unknown function (D...		Lus10004940 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	2.0	0.9102
AT4G40042			Microsomal signal peptidase 12...		Lus10015793 [exp]	6.0	0.8970
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10027484 [exp]	6.5	0.8887
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	7.3	0.8986
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10005910 [exp]	8.4	0.8836
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	10.4	0.8929
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	11.7	0.8878
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	12.4	0.8911
AT1G78310			VQ motif-containing protein (....		Lus10010348 [exp]	19.3	0.8770
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029220 [exp]	19.7	0.8750

Compare expression of checked genes

Lus10004940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.