Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004941 pacid=23174835 polypeptide=Lus10004941 locus=Lus10004941.g ID=Lus10004941.BGIv1.0 annot-version=v1.0 ATGGAATTTGAAGAATACTTGCTGCAGGGAGCTGCCAACGACATTCTCGAAGAGTATTTCCCCAGGCCCAATATCACGATGCCACCTCCAATATTGCAGC AGGTTGTTAAAGCGAGCCAACCAATCGAACCGAAGAAGCTAGCGAGAGAATCCAACGACATGCCACGGTCGAGAAAAAGGGTCACTTGGAAACAGGATGG TTGCTATCGCAGTGAAGAACGTGTTAATAATGGCATGACTGATGAGGAGATCCAGGCTTTTCTACTTACAAGGTCGAAACGAGGCAGAGGAAGCATTGGA GGTCGGGCGGAGGAGAAGACAAGTAGTAGTCCTGCCACAACTACGACCTCCACTTCGTTTTCGAGCTTAAGAACATCATCAAGCTATCAGGAGAATTCTC GCCGGGAAATTCGTGGTGGTCGTGGTGGTGTATTGGGGTCAAGGGTTAGAGAGCATGGATGGTCAAGGATGACAGTGGTGACTACTACTACTACTACTAG TACTAAGTCAGTTGTTGCTGCTGAAGTGCCAAAGCTGTGGAATCCGGTGGAAGCTTGGAGGAATGGAGTTTTTGGAAGCTGCAAGAAGAGAGATCAGACT TGA
AA sequence Show only first row Show all	>Lus10004941 pacid=23174835 polypeptide=Lus10004941 locus=Lus10004941.g ID=Lus10004941.BGIv1.0 annot-version=v1.0 MEFEEYLLQGAANDILEEYFPRPNITMPPPILQQVVKASQPIEPKKLARESNDMPRSRKRVTWKQDGCYRSEERVNNGMTDEEIQAFLLTRSKRGRGSIG GRAEEKTSSSPATTTTSTSFSSLRTSSSYQENSRREIRGGRGGVLGSRVREHGWSRMTVVTTTTTTSTKSVVAAEVPKLWNPVEAWRNGVFGSCKKRDQT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004941 [exp]	0	1
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10025646 [exp]	8.2	0.7533
					Lus10006666 [exp]	13.9	0.7236
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10026678 [exp]	14.4	0.6573
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10021140 [exp]	16.6	0.7203
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002017 [exp]	18.4	0.7171
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10003123 [exp]	18.7	0.6818
					Lus10011795 [exp]	19.8	0.6847
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	29.3	0.7073
AT2G30630			P-loop containing nucleoside t...		Lus10014744 [exp]	35.5	0.7150
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	44.9	0.6987

Compare expression of checked genes

Lus10004941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.