Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55280 187 / 7e-62 RPL23A2, RPL23AB RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) AT2G39460 181 / 2e-59 RPL23A1, RPL23AA, ATRPL23A RIBOSOMAL PROTEIN L23A1, ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, ribosomal protein L23AA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005441 [exp] 216 / 6e-73 AT3G55280 208 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10023438 [exp] 210 / 6e-71 AT3G55280 206 / 4e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10030325 [exp] 210 / 7e-71 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040316 [exp] 211 / 1e-70 AT3G55280 202 / 2e-67 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005883 [exp] 208 / 3e-70 AT3G55280 205 / 7e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10003290 [exp] 207 / 1e-69 AT3G55280 207 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040865 [exp] 212 / 1e-65 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10024430 [exp] 89 / 3e-23 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10025302 [exp] 89 / 3e-23 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027000 [exp] 204 / 2e-68 AT3G55280 199 / 2e-66 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.008G050200 [exp] 202 / 1e-67 AT3G55280 187 / 8e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.010G210300 [exp] 202 / 2e-67 AT3G55280 195 / 7e-65 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.016G079800 [exp] 201 / 2e-67 AT3G55280 187 / 5e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.006G213300 [exp] 199 / 1e-66 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00276 [flax] [poplar] Ribosomal_L23 Ribosomal protein L23 PF03939 [flax] [poplar] Ribosomal_L23eN Ribosomal protein L23, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004942 pacid=23174815 polypeptide=Lus10004942 locus=Lus10004942.g ID=Lus10004942.BGIv1.0 annot-version=v1.0 ATGGCACCTCCGAAAGATAGCAAGGCGAAGCCAGATGCCAAGGCACAGGCAGCCAAGGCCGCAAAGGCAGTGAAGTCAGGCCCTACTTTCAAGAAGTCCG CCAAGAAGATCAGGACCAAGGTCACCTTCCACCGACCGAGGACACTGAAGAAGGAGCGAAATCCCAAGTACCCCAGAATCAGTGCACCTCCGAGGAACAA GCTTGACCATTACCAGATTCTGAAGTTCCCTTTGACCACCGAGTCTGCCATGAAGAAGATCGAGGACAACAACACTCTGGTGTTCATCGTTGACATCCGT GCCGACAAGAAGAAGATCAAGGATGCCGTCAAGAAGATGTATGACATCCAAGCAAAGAAAGTCAACACTCTCATCAGGCCGGATGGTACCAAGAAGGCGT ACGTTAGGTTGACACCGGACTACGATGCATTGGATGTCGCCAACAAAATCGGCATCATCTAA
AA sequence Show only first row Show all	>Lus10004942 pacid=23174815 polypeptide=Lus10004942 locus=Lus10004942.g ID=Lus10004942.BGIv1.0 annot-version=v1.0 MAPPKDSKAKPDAKAQAAKAAKAVKSGPTFKKSAKKIRTKVTFHRPRTLKKERNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIR ADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10004942 [exp]	0	1
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	5.2	0.9461
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	5.8	0.9503
AT5G02740			Ribosomal protein S24e family ...		Lus10003991 [exp]	6.7	0.9435
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	7.7	0.9497
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	8.4	0.9388
AT3G06790			plastid developmental protein ...		Lus10016825 [exp]	8.7	0.9304
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	9.6	0.9458
AT5G56710			Ribosomal protein L31e family ...		Lus10015698 [exp]	11.7	0.9407
AT5G55140			ribosomal protein L30 family p...		Lus10004595 [exp]	12.5	0.9355
AT3G16780			Ribosomal protein L19e family ...		Lus10016829 [exp]	14.0	0.9338

Compare expression of checked genes

Lus10004942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.