Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59790 254 / 3e-80 Domain of unknown function (DUF966) (.1) AT3G46110 217 / 8e-67 Domain of unknown function (DUF966) (.1), Domain of unknown function (DUF966) (.2) AT2G28150 162 / 4e-44 Domain of unknown function (DUF966) (.1) AT5G10150 140 / 5e-37 Domain of unknown function (DUF966) (.1) AT1G05577 115 / 1e-28 Domain of unknown function (DUF966) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005442 [exp] 613 / 0 AT5G59790 294 / 4e-96 Domain of unknown function (DUF966) (.1) Lus10040860 [exp] 342 / 5e-114 AT5G59790 301 / 1e-98 Domain of unknown function (DUF966) (.1) Lus10005887 [exp] 240 / 4e-74 AT5G59790 293 / 5e-95 Domain of unknown function (DUF966) (.1) Lus10021417 [exp] 163 / 9e-45 AT2G28150 452 / 4e-155 Domain of unknown function (DUF966) (.1) Lus10016150 [exp] 163 / 1e-44 AT2G28150 451 / 2e-154 Domain of unknown function (DUF966) (.1) Lus10030328 [exp] 140 / 2e-38 AT5G59790 126 / 8e-34 Domain of unknown function (DUF966) (.1) Lus10003286 [exp] 134 / 7e-36 AT5G59790 127 / 2e-33 Domain of unknown function (DUF966) (.1) Lus10037468 [exp] 99 / 3e-22 AT1G05577 166 / 4e-47 Domain of unknown function (DUF966) (.1) Lus10003921 [exp] 92 / 3e-20 AT1G05577 159 / 2e-45 Domain of unknown function (DUF966) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235700 [exp] 294 / 2e-95 AT5G59790 343 / 6e-115 Domain of unknown function (DUF966) (.1) Potri.009G027500 [exp] 271 / 2e-86 AT5G59790 333 / 6e-111 Domain of unknown function (DUF966) (.1) Potri.010G209600 [exp] 160 / 1e-46 AT5G59790 161 / 2e-47 Domain of unknown function (DUF966) (.1) Potri.004G216200 [exp] 166 / 8e-46 AT2G28150 501 / 2e-173 Domain of unknown function (DUF966) (.1) Potri.009G005800 [exp] 165 / 3e-45 AT2G28150 531 / 0.0 Domain of unknown function (DUF966) (.1) Potri.008G051000 [exp] 159 / 3e-45 AT5G59790 188 / 1e-56 Domain of unknown function (DUF966) (.1) Potri.005G078300 [exp] 144 / 2e-38 AT5G10150 272 / 1e-87 Domain of unknown function (DUF966) (.1) Potri.009G024900 [exp] 108 / 2e-25 AT1G05577 233 / 2e-72 Domain of unknown function (DUF966) (.1) Potri.001G232300 [exp] 104 / 3e-24 AT1G05577 231 / 4e-72 Domain of unknown function (DUF966) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06136 [flax] [poplar] DUF966 Domain of unknown function (DUF966)
Representative CDS sequence Show only first row Show all	>Lus10004943 pacid=23174849 polypeptide=Lus10004943 locus=Lus10004943.g ID=Lus10004943.BGIv1.0 annot-version=v1.0 ATGGCGGTTAGTTCCAGAGCTAGAAACGCCGAGCAGCTCCGTCTCCCTAGGAAATGGACTACCGACGACCGCGAACCAACTCCCGATCGTCTCAGATCAG CTCCCGTTCACAATCTTAACCTCGCCGCCGGAGACGGAAACGCCGAGAGAAGAGTCGCCGTCGTTTACTACCTCTCCCGGAACGGCCACCTCGAGCATCC TCACTTCATGGAAGTCCCCCTCTCTTCTCCCCAGGGTCTCTACCTCCGAGATGTAATCAGCCGATTGAACTCGCTCCGTGGCAAAGGAATCGCCGCTCTA TACTCCTGGTCTTGCAAACGGAGCTACAGAAACGGCTTCGTCTGGCACGATTTGGCGGAGAGCGATTTCATATATCCAGCGCACGGCAACGAGTACGTCC TCAAAGGATCGGAGCTGCTGGAGCCTGCGCCGCCGCCTTCGCGGAAATCGTTCGTCGAGTCCACCACTGCTTCGTTCAGATCTATGAAGAATATTCCGGC TGCTGGAGATCAGAACTCGTCGGAGTCGTCTTCTCCGCCGTCGTGCGACGAGCTGGTTCTTAACTCGCGGCGGAGGAATCAATCCTGGAGCTCCAACGAT CTTACCGAGTGCAAGGTCTATAAGGCCGAACCGTTCTCCCAGTCGAGCAGGAGGACGGCGGCTACTCAGACGGAGGACAAACGGCGGAGCAGGAGGCCGG TGAAGATGGAGGAAGAGGAAACGTGTGAGATGGTGGAGGAGGAGGTGAATGAGAGAGGGAGGGAGGAGATCTCGATCTCGATCTCGCCTCCGACGTCTGA TTCCAGCCCGGAGACGCTGGAGAAGTTGATGGAAGCAGACAAACGGCCGATACTCGGCGGCGGGAGCAACTCGAATCCGATGGTGGACGGAGAAGGCAGC TGCAGCGGGGGAAGCGTGCGGACGAAAGCGTCGGCGGTGCTGATGCAGCTGATCTCCTGCGGGTCCAACTCGTTCAGAGACTGTGGAACGGAGGCGTCGA AGGAGCAGAGACTTGCGGTGATTGCAGGACGATCGCCACGTGTGGTGGGGACATCGAAGGAATTTCGGAGTACTCCGGTAGGGGTAAGATTGGAAGAGAA GGAGTATTTTAGCGGGAGCTTGATCGAGACGAAGAAGGACGAAGATGTTCCCGCTCTGAAGAGGTCTAATTCGTACAATGGAAACAGGATTTCCCAGTTG GAAGCGGAGGATGAAGGAGGGGAAGAAGAAGAAGAAGGCAACCCTGCAGCCATCACCAAATGCATTCCGAGGAAAGGAAAAGGAAAAGAGAGCAGCATCA GCAATTCCAGCGAGTTGAAGCCGATGAAGTAG
AA sequence Show only first row Show all	>Lus10004943 pacid=23174849 polypeptide=Lus10004943 locus=Lus10004943.g ID=Lus10004943.BGIv1.0 annot-version=v1.0 MAVSSRARNAEQLRLPRKWTTDDREPTPDRLRSAPVHNLNLAAGDGNAERRVAVVYYLSRNGHLEHPHFMEVPLSSPQGLYLRDVISRLNSLRGKGIAAL YSWSCKRSYRNGFVWHDLAESDFIYPAHGNEYVLKGSELLEPAPPPSRKSFVESTTASFRSMKNIPAAGDQNSSESSSPPSCDELVLNSRRRNQSWSSND LTECKVYKAEPFSQSSRRTAATQTEDKRRSRRPVKMEEEETCEMVEEEVNERGREEISISISPPTSDSSPETLEKLMEADKRPILGGGSNSNPMVDGEGS CSGGSVRTKASAVLMQLISCGSNSFRDCGTEASKEQRLAVIAGRSPRVVGTSKEFRSTPVGVRLEEKEYFSGSLIETKKDEDVPALKRSNSYNGNRISQL EAEDEGGEEEEEGNPAAITKCIPRKGKGKESSISNSSELKPMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59790			Domain of unknown function (DU...		Lus10004943 [exp]	0	1
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	1.0	0.9828
AT5G59790			Domain of unknown function (DU...		Lus10005442 [exp]	3.5	0.9780
AT3G29300			unknown protein		Lus10034904 [exp]	6.9	0.9680
					Lus10007549 [exp]	9.0	0.9773
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	9.2	0.9747
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	10.1	0.9728
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	10.2	0.9727
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	10.5	0.9746
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	12.8	0.9568
AT1G61170			unknown protein		Lus10011222 [exp]	14.5	0.9566

Compare expression of checked genes

Lus10004943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.