Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59950 182 / 3e-57 RNA-binding (RRM/RBD/RNP motifs) family protein AT5G02530 176 / 4e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G37720 130 / 3e-36 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT1G66260 125 / 2e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G10400 57 / 1e-09 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT2G36660 55 / 2e-08 PAB7 poly(A) binding protein 7 (.1) AT2G23350 54 / 4e-08 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G71770 54 / 5e-08 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT2G37220 52 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G22760 51 / 4e-07 PAB3 poly(A) binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005445 [exp] 283 / 2e-96 AT5G59950 210 / 9e-68 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10025329 [exp] 192 / 8e-61 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10024413 [exp] 191 / 4e-60 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005895 [exp] 189 / 8e-60 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000446 [exp] 145 / 1e-41 AT5G37720 211 / 1e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10010982 [exp] 144 / 3e-41 AT5G37720 209 / 7e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10023417 [exp] 126 / 6e-35 AT5G59950 130 / 3e-37 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040851 [exp] 119 / 3e-31 AT5G02530 199 / 2e-64 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10040299 [exp] 70 / 8e-14 AT5G59950 77 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093944 [exp] 195 / 6e-62 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G236900 [exp] 184 / 7e-58 AT5G59950 187 / 2e-59 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.017G129900 [exp] 150 / 6e-44 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G087000 [exp] 145 / 4e-42 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.010G208000 [exp] 144 / 6e-42 AT5G59950 138 / 8e-40 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.008G052601 [exp] 108 / 4e-29 AT5G02530 97 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G227500 [exp] 57 / 2e-09 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.001G141300 [exp] 53 / 4e-08 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G157300 [exp] 51 / 4e-08 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 53 / 5e-08 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10004946 pacid=23174820 polypeptide=Lus10004946 locus=Lus10004946.g ID=Lus10004946.BGIv1.0 annot-version=v1.0 ATGTCAAGCGCTTTGGATAGGTCGCTCGAAGACATCATCAAAAGCAACAAGAAGCCTGGATCCGGCGGCAGCTCCCGCGGACGCGGCGGCATCCGAGGAG GAGCTTCCGGTGCCGGAGGTCCAGCTCGCCGTATCCCCGATCGGAGCTTCAATCGCGCCACTCCATATGCGGCGGCTCACATGGCTCCGGAGATGGCGTG GCAGCACGATATGTTCACTGATCCGGCCATGGCTGCTTTCCAAGCTCAAGCAGTTCAGGCTTCTGCAATTGAGACGGGGACCAAGCTCTACATCTCCAAT CTTGATTATGGCGTCACGAATGAAGATGTCAAGGAATTGTTTTCTGAAGTTGGAGACTTGAAACGGTACGCAATACATTACGACCGGAGTGGGAGATCCA AGGGAACTGCGGAAGTGGTGTTTTCACGGAGGGAAGATGGTCTTGCAGCTGTGAAGAGATACAACAACGTTCAGCTTGATGGGAAGCCGATGAAGATAGA GATTGTGGGAACCAATATCGTCACTGCCGCCCCTGCTCCTATGCCTCCTATGGTTCTTAACGGAAACTTCGGAAATCCGATTGGTTTTGGCAGAGGTGGT CAAGGTAGGGGTGCTGGTTTCTCTAGGCCACGTGGCGGCCTAGGTGGTGGTGGCCGAGGATTTGGAAGGGGGCGAGGGCGTAGAAACGGAGGAGGCCGTG GAGGAGGTGAAAAGATATCTGCTGAAGATCTCGATGCTGAGTTGGAGAAGTATCATTCAGAAGCGATGCAAGAAGAGAGTTGA
AA sequence Show only first row Show all	>Lus10004946 pacid=23174820 polypeptide=Lus10004946 locus=Lus10004946.g ID=Lus10004946.BGIv1.0 annot-version=v1.0 MSSALDRSLEDIIKSNKKPGSGGSSRGRGGIRGGASGAGGPARRIPDRSFNRATPYAAAHMAPEMAWQHDMFTDPAMAAFQAQAVQASAIETGTKLYISN LDYGVTNEDVKELFSEVGDLKRYAIHYDRSGRSKGTAEVVFSRREDGLAAVKRYNNVQLDGKPMKIEIVGTNIVTAAPAPMPPMVLNGNFGNPIGFGRGG QGRGAGFSRPRGGLGGGGRGFGRGRGRRNGGGRGGGEKISAEDLDAELEKYHSEAMQEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10004946 [exp]	0	1
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	3.2	0.9064
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10038513 [exp]	6.2	0.9033
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10020738 [exp]	7.5	0.8937
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10019889 [exp]	10.8	0.8946
AT5G12110			Glutathione S-transferase, C-t...		Lus10026784 [exp]	12.7	0.8738
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10016879 [exp]	13.9	0.8445
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10006878 [exp]	15.5	0.8220
AT1G29040			unknown protein		Lus10000987 [exp]	20.7	0.7827
AT1G26880			Ribosomal protein L34e superfa...		Lus10037177 [exp]	23.3	0.8836
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10017993 [exp]	24.7	0.8428

Compare expression of checked genes

Lus10004946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.