Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59960 462 / 8e-164 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005446 [exp] 649 / 0 AT5G59960 465 / 3e-164 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237000 [exp] 507 / 0 AT5G59960 569 / 0.0 unknown protein Potri.009G028500 [exp] 498 / 5e-178 AT5G59960 551 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004947 pacid=23174822 polypeptide=Lus10004947 locus=Lus10004947.g ID=Lus10004947.BGIv1.0 annot-version=v1.0 ATGTCCGCCGGAACTGCTCCTCCTCCTTCAACTCGAAGCTGTTCTTATCTCGATGCTCTCACTCTCGAAATCGAGAAGAAGCTCCAGCGGGCACTAGCTT CTTCGTCTCAGAGAATCAACGTGTTGCAAGAGCTTTTCGCTGACATCGCTTTAGAAGTTGATGAGCGTGCCAAAGATATTATTCTCGGCAGGGAAGAAGA TGCAATTTCTCCCGTGCAGGATGGCTACAACACTCAATTGTGCTTTTACAATGTGCTTGCTGATTACTATGTCGAGGCGCCTGAAAGTGGGAAGAGAATT CTTGACTTGATTGTCCTTCTATGGAGCCAGTCATTTGCATCGCATATATTCGCTCTTCTGTTCCACAAATGGTTATTTGATGCTCAACTGGACAGGAATG AAGTGCTTCTACGTTACTCGTCTGCTCTTGTTCAAGGTGCTACTAATGTTTTCTGGATTGACATTCAAACAAACACAAGGCGCTTCCAGACTCTCTTCCA TTACCTCCTTGATGAAGTGGCTCTAGAGACGACACGGTTGAATAAAATTCCAATACAGGCCCAGCGAGATTTGTTTCTCTTACTTTCGAGATTTATACTA TTTTACAACTCGGTCGATAAGCTTCCAAGCTTCTTAGATCAATTCCCAGTCTTTCCAAACGCTTTCTTAGTTGGTGGTCCTGCAGACTTCTTCGTTATCG AACTTGCAGACCAGATTCAAAAGCTGAAAGTAGAACCAGTCTTGCTACACGACCTCTCAGAAATAAAGGTTCTACAAGGAATGGAACTGAGGATGACCAC AAGCACAAGACTAAAGGCATGCCTATATAGCTTCACTTCGCCTGGAGGCCCAATGTATCCCACGAGAGCCGTCCGTCATGCTGCATGGGACGCTTTGGAT TTTCTCTTCCCTGTGAGTCGTGGAGTTTACATGAATCGCATGAATGTGTCAACAACGGGGTTTTTCAACTGTGTTGCAGGTGGGACAATACCCGAGGCAC ATAATAAGTCTGTTCTTCAGGCTGTTGTATCCGTGGTACTGGCCCTCGTCGTGTTGGAACTTCGTAATCTCTTGCATAAAGGCGGTATTCTTTTCGTTGC TGAGGCTCGTGTTCTCTAG
AA sequence Show only first row Show all	>Lus10004947 pacid=23174822 polypeptide=Lus10004947 locus=Lus10004947.g ID=Lus10004947.BGIv1.0 annot-version=v1.0 MSAGTAPPPSTRSCSYLDALTLEIEKKLQRALASSSQRINVLQELFADIALEVDERAKDIILGREEDAISPVQDGYNTQLCFYNVLADYYVEAPESGKRI LDLIVLLWSQSFASHIFALLFHKWLFDAQLDRNEVLLRYSSALVQGATNVFWIDIQTNTRRFQTLFHYLLDEVALETTRLNKIPIQAQRDLFLLLSRFIL FYNSVDKLPSFLDQFPVFPNAFLVGGPADFFVIELADQIQKLKVEPVLLHDLSEIKVLQGMELRMTTSTRLKACLYSFTSPGGPMYPTRAVRHAAWDALD FLFPVSRGVYMNRMNVSTTGFFNCVAGGTIPEAHNKSVLQAVVSVVLALVVLELRNLLHKGGILFVAEARVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59960			unknown protein		Lus10004947 [exp]	0	1
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	2.2	0.9449
AT1G27290			unknown protein		Lus10003121 [exp]	3.5	0.9393
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10028303 [exp]	3.9	0.9357
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10013117 [exp]	3.9	0.9279
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10008084 [exp]	5.3	0.9095
AT5G59960			unknown protein		Lus10005446 [exp]	6.9	0.8814
AT2G30600			BTB/POZ domain-containing prot...		Lus10012262 [exp]	7.2	0.9294
AT2G01690			ARM repeat superfamily protein...		Lus10021813 [exp]	8.8	0.8930
AT3G02555			unknown protein		Lus10027224 [exp]	11.3	0.8884
AT3G29270			RING/U-box superfamily protein...		Lus10005220 [exp]	12.0	0.9225

Compare expression of checked genes

Lus10004947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.