Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39570 480 / 4e-169 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G36840 404 / 3e-139 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT4G22780 61 / 9e-10 ACR7 ACT domain repeat 7 (.1) AT1G12420 59 / 2e-09 ACR8 ACT domain repeat 8 (.1) AT1G69040 54 / 1e-07 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 47 / 2e-05 ACR5 ACT domain repeat 5 (.1.2) AT4G35780 42 / 0.001 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005447 [exp] 644 / 0 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10005157 [exp] 480 / 5e-169 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10001702 [exp] 473 / 3e-166 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10017470 [exp] 431 / 9e-150 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10023921 [exp] 423 / 2e-146 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10014418 [exp] 419 / 9e-145 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10028812 [exp] 225 / 2e-70 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10036827 [exp] 51 / 1e-06 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10019191 [exp] 49 / 3e-06 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237100 [exp] 629 / 0 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G207700 [exp] 499 / 3e-176 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.008G052900 [exp] 494 / 1e-174 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G228500 [exp] 439 / 6e-153 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G442600 [exp] 427 / 3e-148 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 424 / 6e-147 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 415 / 2e-143 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.003G116600 [exp] 68 / 4e-12 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.001G115600 [exp] 67 / 6e-12 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.007G006500 [exp] 52 / 7e-07 AT5G65890 567 / 0.0 ACT domain repeat 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10004948 pacid=23174827 polypeptide=Lus10004948 locus=Lus10004948.g ID=Lus10004948.BGIv1.0 annot-version=v1.0 ATGCAGAGCGACGACACCGTAGTGATCGAGAGAGGGAAGAAGCCTGGAGAACCACACATCGTCACTGTGAATTGTCCCGATAAGACCGGCCTGGCCTGTG ATATTTGCAGGATCATTCTCGAAGTCGGCCTTTACATCGCCAAAGGAGATGTCTCGACTGATGGAAACTGGTGCTACATAGTGTTGTACGTAGTACCTAA TTCTGGATTACTCGTAAGATGGACGAGCTTGAAGAATCGTCTTCTGTCTACTTGCCCATCGTGTTCGATTTCATTCGTTCTACCGCGGGATTTGGCGATG CATTCGATTCCTTCGTCTCCTGTTTACTTGTTGAAGTTCTGTAGCCTTGACCGGAGAGGATTACTGCATGATGTGACGCAGGTTCTGTATGAGCTTGAGC TTGCTATACAAAGCGTAAAAGTGACCACAACTCCTGATGGAAGAGTCCTGGACCTTTTCTTCATAACAGATAACATGGAGCTTTTACACACAAAGAAACG ACAAGACGAGACATGTAAAAAATTGCAAACTGTGTTAGGTGAATCGTGCATCAGCTGTGAACTTCAGTTGGCCGGTATTGAATACGAATGCCTTCAAGGT CGGACCTCTCTGTGTCCAACCATTGCGAATGAATTGTTCCAATGTGAGATGATAACAGAGAGAGAAGTTCGGTCGCAAGCTCTTAGCTCCGATCTGATCA GATTGAAGAGTGCCAACGTAACAGTAGACAATTCACTGAGCCCTGGTCATACGTTGCTTCATATACACTGCCTTGATCACAAGGGTCTTCTATACGACGT GATGAGAACATTGAAAGACTGCAATATCCAGGTATCGTATGGACGATTCTCTCCGAACACGAAAGGCCATCGGGAGCTGGACCTCTTCATTCAGCAAAAG GACGGGAACAAGAAGATTGTGGATCCAGACAAGCAAAAGGAACTTTGTTCTCGTTTAAAGGTAGAAATGCTTCATCCGTTCCGGGTGATGATCACAAACA GAGGTCCAGATACCGAACTTCTGGTTGCGAATCCTGTCGAGCTCTCCGGTAACGGAAGACCAATGGTGTTCTACGACGTGACCCTTGCCCTGAAAGCACT TGAGATCTGCATATTCTCTGCCGAAATCGGAAGGCATTCATCGGGAGAAAGGGAATGGGAGGTGTACAGATTTCTGCTAGACGAGAAGTGCAGATATCGG CTATGGAGTGAAGCAGCTAGAACTGAGATTGTTGATATTGTAAGGAGAACTCTGATGGGATTGTCTATAAAGTGA
AA sequence Show only first row Show all	>Lus10004948 pacid=23174827 polypeptide=Lus10004948 locus=Lus10004948.g ID=Lus10004948.BGIv1.0 annot-version=v1.0 MQSDDTVVIERGKKPGEPHIVTVNCPDKTGLACDICRIILEVGLYIAKGDVSTDGNWCYIVLYVVPNSGLLVRWTSLKNRLLSTCPSCSISFVLPRDLAM HSIPSSPVYLLKFCSLDRRGLLHDVTQVLYELELAIQSVKVTTTPDGRVLDLFFITDNMELLHTKKRQDETCKKLQTVLGESCISCELQLAGIEYECLQG RTSLCPTIANELFQCEMITEREVRSQALSSDLIRLKSANVTVDNSLSPGHTLLHIHCLDHKGLLYDVMRTLKDCNIQVSYGRFSPNTKGHRELDLFIQQK DGNKKIVDPDKQKELCSRLKVEMLHPFRVMITNRGPDTELLVANPVELSGNGRPMVFYDVTLALKALEICIFSAEIGRHSSGEREWEVYRFLLDEKCRYR LWSEAARTEIVDIVRRTLMGLSIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10004948 [exp]	0	1
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10005447 [exp]	1.0	0.9030
AT4G35360			Uncharacterised conserved prot...		Lus10026563 [exp]	2.4	0.8291
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	6.0	0.8441
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	6.3	0.8573
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	6.5	0.8514
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10000375 [exp]	7.7	0.8326
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10007293 [exp]	10.6	0.8233
AT3G56580			RING/U-box superfamily protein...		Lus10001583 [exp]	13.7	0.8079
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10020597 [exp]	18.3	0.8252
AT5G50740			Heavy metal transport/detoxifi...		Lus10038785 [exp]	24.2	0.7999

Compare expression of checked genes

Lus10004948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.