Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46440 150 / 6e-46 UXS5 UDP-XYL synthase 5 (.1.2) AT2G28760 148 / 3e-45 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 145 / 3e-44 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G62830 115 / 7e-32 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 115 / 7e-32 UXS4 UDP-xylose synthase 4 (.1.2) AT3G53520 107 / 6e-29 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28755 76 / 8e-20 UDP-D-glucuronate carboxy-lyase-related (.1) AT1G73250 46 / 5e-07 GER1, ATFX "GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1", ACTIVATING TRANSCRIPTION FACTOR 5, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (.1) AT1G17890 42 / 8e-06 GER2 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G28840 39 / 0.0002 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005450 [exp] 168 / 5e-53 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005900 [exp] 158 / 1e-49 AT3G46440 513 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10040847 [exp] 157 / 7e-49 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001705 [exp] 146 / 2e-45 AT2G28760 501 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005155 [exp] 147 / 8e-45 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10001707 [exp] 146 / 2e-44 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10007875 [exp] 110 / 4e-32 AT3G62830 352 / 4e-122 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10030368 [exp] 112 / 7e-31 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10015038 [exp] 112 / 8e-31 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G237200 [exp] 153 / 4e-47 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.008G053100 [exp] 147 / 6e-45 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.010G207200 [exp] 147 / 9e-45 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.002G204400 [exp] 113 / 4e-31 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 112 / 1e-30 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G214000 [exp] 111 / 1e-30 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.016G080500 [exp] 110 / 2e-30 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.018G101700 [exp] 42 / 7e-06 AT1G17890 549 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G179100 [exp] 41 / 2e-05 AT1G17890 565 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004951 pacid=23174823 polypeptide=Lus10004951 locus=Lus10004951.g ID=Lus10004951.BGIv1.0 annot-version=v1.0 ATGGATGGAGAAAACACTGGACCGATCAACATTGGAAACCCAGGAGAGTTCGCCATGACTGAACTCGCCGAAACAGTGAAGGAGCTGATCAATCCAGAGG TGGAGATAAAGATGGCCGAGAACACACCCGACGATCCGAAGCAGAGGAAGCCAGACATAACAAAGGCTAAAGAACTCTTGGGATGGGAGCCTAAGGTGAA GTTGAGGGAAGGGCTTCTCCTTATAGAACAAGACTTCCGGAGAAGGCTAGGTGTGTCGAACAAGTGA
AA sequence Show only first row Show all	>Lus10004951 pacid=23174823 polypeptide=Lus10004951 locus=Lus10004951.g ID=Lus10004951.BGIv1.0 annot-version=v1.0 MDGENTGPINIGNPGEFAMTELAETVKELINPEVEIKMAENTPDDPKQRKPDITKAKELLGWEPKVKLREGLLLIEQDFRRRLGVSNK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10004951 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10025497 [exp]	1.0	0.9015
					Lus10010826 [exp]	8.9	0.8076
					Lus10022108 [exp]	11.0	0.8076
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	12.6	0.8076
					Lus10003272 [exp]	14.1	0.8076
AT3G47090			Leucine-rich repeat protein ki...		Lus10028479 [exp]	15.5	0.8076
					Lus10030783 [exp]	16.7	0.8076
					Lus10017842 [exp]	17.9	0.8076
					Lus10036152 [exp]	19.0	0.8076
					Lus10037861 [exp]	20.0	0.8076

Compare expression of checked genes

Lus10004951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.