Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46450 338 / 3e-112 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005452 [exp] 566 / 0 AT3G46450 417 / 2e-142 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10040845 [exp] 446 / 3e-154 AT3G46450 453 / 3e-156 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10016575 [exp] 222 / 2e-67 AT3G46450 242 / 1e-74 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G028700 [exp] 405 / 2e-138 AT3G46450 472 / 4e-164 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Potri.001G237400 [exp] 390 / 1e-132 AT3G46450 446 / 7e-154 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10004953 pacid=23174811 polypeptide=Lus10004953 locus=Lus10004953.g ID=Lus10004953.BGIv1.0 annot-version=v1.0 ATGGCAGACCAGCCAAGAGATTCTAGCTCAAGTGGTAGCTCCCTGGTCCCCTGTAGGGGGAACGTTAGAACCAAGAGCAATCGCAAGGGAGCATTGCAGA ATGCTCGTGGATGCTTTAGTAGTGGTGCGGTTGGTGAAGTTGGCTTGTTTATCTTGAAACTTGCTGCATTGGAGACTTTACGAAGGATCTCAAAGTCGAA GTGTCCTCCTGTATGGCACAGTGTTCAGGCCTTGCAGTTTCTTTGCTACCCGCCGTTCAAGTGGTTTCAGAGGTGGGCACCGTTCAAGGGATTGGTTCAG GGAATTCAGATGATATCAAGACCGTTGCTTGTCCTTTCAGTTGCAACGGCAGTTAGTGATGAGTTATCTCACTCCAATGAAACTTCGGATGACAATGATG GCTCTCATGCGGATTTTGAAACATCCCCACCAGAAGAACCGCCTTCTTCTAGTGTGTCTGCTCTTGATGCAAGTGATGGCAATGCTGAAAATACGGCGCC TGAAAATTGGATGCTGGAACTCGGAAAAGAGCTAGCAAATCAAGGAATCACGTTGCCGGAAAGGTTTAACGAAGATGAGCTACGTAGATTCTATGATGCT GCTGAAGGGGACTTCCAAAGCTTTCTCTTATCAATTAAGAATACGATCCGTTGGAGGGAAACATATCGAATCCTTTCCGAAGATGAGCTTGGAATGTGGT CGAACGTGGTGTTCTGGCATGGATATGACGTGAATAACCAGCCTTGTCTTATTGTTCGGCTCGGACTCGCCTGCACGAACTTGCTGGTTCAGGATCGGCC TCGGTTTGCTCAAGCAATCAAGTACTGTAATAAACTTGGTGATGCTCCAGTATCTCAGGTGGAGTACGGAATCCTTCATTTCCTCAACAAAGACAATCCT CAGATTATGGTTATAGTCGACTGCGCTGGAATAACTCCGTTGCGGATTCCCATGCAAATGGTGCGATCGTGTTCTTCGTATCTGCAGCATAACTTCCCCA ACCGCCTTGGTCGCTTGCTGATCATCCGGCTGCCTCCTGTTGCCCGTGTCATCGCCCAAACCTTCCTTCAGGCAAGCGATTTCTCATTTTTTTCCAGTTC TCAACATGGAAGTAACCTGCTAAGTGCTAACGGTTGTTATAATTCTGTTTCAGATACTGAAACCAGTCACGAAGAAGAAGCTTCGAGTCGAAGGAAAAAT GTACCGCAAGGCTCTCTCCGAATATCTCGAGGCGGTCCCGGCTTATCTCGGCGGATGCTGTGCTTGCCAGCGATGCACCGAGACCACCAATCAGCGGCAA GCTGGAAATGA
AA sequence Show only first row Show all	>Lus10004953 pacid=23174811 polypeptide=Lus10004953 locus=Lus10004953.g ID=Lus10004953.BGIv1.0 annot-version=v1.0 MADQPRDSSSSGSSLVPCRGNVRTKSNRKGALQNARGCFSSGAVGEVGLFILKLAALETLRRISKSKCPPVWHSVQALQFLCYPPFKWFQRWAPFKGLVQ GIQMISRPLLVLSVATAVSDELSHSNETSDDNDGSHADFETSPPEEPPSSSVSALDASDGNAENTAPENWMLELGKELANQGITLPERFNEDELRRFYDA AEGDFQSFLLSIKNTIRWRETYRILSEDELGMWSNVVFWHGYDVNNQPCLIVRLGLACTNLLVQDRPRFAQAIKYCNKLGDAPVSQVEYGILHFLNKDNP QIMVIVDCAGITPLRIPMQMVRSCSSYLQHNFPNRLGRLLIIRLPPVARVIAQTFLQASDFSFFSSSQHGSNLLSANGCYNSVSDTETSHEEEASSRRKN VPQGSLRISRGGPGLSRRMLCLPAMHRDHQSAASWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46450			SEC14 cytosolic factor family ...		Lus10004953 [exp]	0	1
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10020778 [exp]	4.5	0.7979
AT4G02720			unknown protein		Lus10042601 [exp]	6.9	0.8108
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031259 [exp]	7.0	0.8325
AT1G48040			Protein phosphatase 2C family ...		Lus10017106 [exp]	9.4	0.7868
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	10.2	0.8073
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10007357 [exp]	14.1	0.7937
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037682 [exp]	21.4	0.7963
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002913 [exp]	27.6	0.7642
AT3G46450			SEC14 cytosolic factor family ...		Lus10005452 [exp]	27.7	0.7388
AT5G51670			Protein of unknown function (D...		Lus10031691 [exp]	29.6	0.7611

Compare expression of checked genes

Lus10004953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.