Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28790 330 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1) AT5G40020 193 / 2e-61 Pathogenesis-related thaumatin superfamily protein (.1) AT5G24620 188 / 2e-57 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G73620 180 / 4e-56 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 179 / 5e-56 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 179 / 9e-56 ATLP-3 thaumatin-like protein 3 (.1) AT2G17860 179 / 1e-55 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 178 / 1e-55 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G75050 178 / 2e-55 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 179 / 8e-55 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005453 [exp] 487 / 3e-177 AT2G28790 333 / 1e-116 Pathogenesis-related thaumatin superfamily protein (.1) Lus10040843 [exp] 348 / 4e-122 AT2G28790 322 / 6e-112 Pathogenesis-related thaumatin superfamily protein (.1) Lus10016572 [exp] 342 / 1e-119 AT2G28790 328 / 3e-114 Pathogenesis-related thaumatin superfamily protein (.1) Lus10004955 [exp] 206 / 3e-67 AT5G59350 147 / 2e-44 unknown protein Lus10028448 [exp] 187 / 2e-58 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10009058 [exp] 184 / 1e-57 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10008304 [exp] 184 / 2e-57 AT5G40020 328 / 4e-114 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028447 [exp] 185 / 5e-57 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 184 / 7e-57 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G028800 [exp] 351 / 2e-123 AT2G28790 370 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G237600 [exp] 343 / 2e-120 AT2G28790 350 / 4e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G173200 [exp] 196 / 2e-61 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.017G075500 [exp] 192 / 1e-60 AT5G40020 355 / 1e-124 Pathogenesis-related thaumatin superfamily protein (.1) Potri.009G132500 [exp] 193 / 5e-60 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G240900 [exp] 192 / 6e-60 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020500 [exp] 187 / 3e-58 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G000800 [exp] 186 / 5e-58 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 186 / 3e-57 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.005G112600 [exp] 185 / 4e-57 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10004954 pacid=23174809 polypeptide=Lus10004954 locus=Lus10004954.g ID=Lus10004954.BGIv1.0 annot-version=v1.0 ATGGCTTCCACTCAACAAACCCTCTATGGCGTCGTTTCGCTCCTCTTCCTCCTCTCCCTAACCCCAACCCAAGCCACGTCACCACTAACCTTGACTCTAG TCAACAACTGCCCCTTCACAATCTACCCAGCCATCCAACCATCCGCCGGCTCCCCCATCCTCCAAAACGGCGGCGGATTCCCCCGCCACCACTTCACCCA CAAATCCTTCCCCGCCCCCAACCACCACTGGTCGGGCCGGATCTGGGCCCGAACCGGCTGCTCTCACACCCCCGCCAACAAGTTCCGCTGCGTCACCGGA GATTGCGCCAACCGCCTCGAATGCAACGGATTCGGTGGTGCCACTCCGGCCACACTCGTCCAGCTCACCCTCCACCACGGAACCGGCGACTTCTCTTCCT ACGGAGTGTCTCTCGTCGACGGGTACAACGTCCCCCTGACCGTGACCCCACACGAGGGAAAAGGGCGCTGCCCGGTCGTGGGTTGTCAGCCGGATTTGCT GCCCGGCTGCCCGGATAAGCTGAGAGTTTATGGCCCCCACGGCGGCGTGGTGGGGTGCAAGAGCGGGTGCGAGGCGTTTGGGACCGATGAGCTGTGCTGT AGGAACCACTATAACAGCCCGCACACGTGTCGGCCGTCGAGCTTCTCTCAGTATTTCAAGCGCGCGTGTCCTTCCTCCTTTACTTACGCGCATGACACGC CTTCGCTAATGCATGACTGCTCCTCGCCGCGTGAGCTCAAGGTCATATTCTGCCACTAA
AA sequence Show only first row Show all	>Lus10004954 pacid=23174809 polypeptide=Lus10004954 locus=Lus10004954.g ID=Lus10004954.BGIv1.0 annot-version=v1.0 MASTQQTLYGVVSLLFLLSLTPTQATSPLTLTLVNNCPFTIYPAIQPSAGSPILQNGGGFPRHHFTHKSFPAPNHHWSGRIWARTGCSHTPANKFRCVTG DCANRLECNGFGGATPATLVQLTLHHGTGDFSSYGVSLVDGYNVPLTVTPHEGKGRCPVVGCQPDLLPGCPDKLRVYGPHGGVVGCKSGCEAFGTDELCC RNHYNSPHTCRPSSFSQYFKRACPSSFTYAHDTPSLMHDCSSPRELKVIFCH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	0	1
AT4G40042			Microsomal signal peptidase 12...		Lus10006422 [exp]	3.0	0.8761
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	3.2	0.8850
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10003801 [exp]	3.5	0.8679
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019605 [exp]	4.8	0.8494
AT1G79060			unknown protein		Lus10031218 [exp]	8.7	0.8967
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	8.9	0.9002
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	9.4	0.8697
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	10.6	0.8446
AT1G49870			unknown protein		Lus10013902 [exp]	12.1	0.8156
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10028322 [exp]	13.1	0.7916

Compare expression of checked genes

Lus10004954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.