Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59350 71 / 6e-15 unknown protein AT2G28790 44 / 3e-05 Pathogenesis-related thaumatin superfamily protein (.1) AT2G39560 43 / 4e-05 Putative membrane lipoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004954 [exp] 168 / 3e-52 AT2G28790 330 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1) Lus10005456 [exp] 137 / 2e-41 AT5G59350 92 / 7e-23 unknown protein Lus10005453 [exp] 137 / 3e-40 AT2G28790 333 / 1e-116 Pathogenesis-related thaumatin superfamily protein (.1) Lus10016572 [exp] 70 / 2e-14 AT2G28790 328 / 3e-114 Pathogenesis-related thaumatin superfamily protein (.1) Lus10040843 [exp] 69 / 3e-14 AT2G28790 322 / 6e-112 Pathogenesis-related thaumatin superfamily protein (.1) Lus10040839 [exp] 69 / 7e-14 AT5G59350 160 / 2e-47 unknown protein Lus10016568 [exp] 68 / 1e-13 AT5G59350 166 / 1e-49 unknown protein Lus10040302 [exp] 52 / 4e-08 AT5G59350 117 / 3e-31 unknown protein Lus10023421 [exp] 52 / 7e-08 AT5G59350 115 / 2e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G238300 [exp] 78 / 3e-17 AT5G59350 146 / 1e-41 unknown protein Potri.009G029300 [exp] 76 / 2e-16 AT5G59350 161 / 1e-47 unknown protein Potri.009G028800 [exp] 73 / 1e-15 AT2G28790 370 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Potri.010G206100 [exp] 67 / 4e-13 AT5G59350 111 / 1e-28 unknown protein Potri.008G054400 [exp] 65 / 1e-12 AT5G59350 91 / 8e-21 unknown protein Potri.001G237600 [exp] 62 / 8e-12 AT2G28790 350 / 4e-123 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004955 pacid=23174856 polypeptide=Lus10004955 locus=Lus10004955.g ID=Lus10004955.BGIv1.0 annot-version=v1.0 ATGCGCGTAAGTAAAGGAGGAAGGACACGCGCGCTTGAAATACTGAGAGAAGCTCGACGGCCGACACGTGTGCGGGCTGTTATAGTGGTTCCTACAGCAC AGCTCATCGGTCCCAAACGCCTCGCACCCGCTCTTGCACCCCACCACGCCGCCGTGGGGGCCATAAACTCTCAGCTTATCCGGGCAGCCGGGCAGCAAAT CCGGCTGACAACCCACGACCGGGCAGCGCCCTTTTCCCTCGTGTGGGGTCACGGTCAGGGGGACGTTGTACCCGTCGACGAGAGACACTCCGACGGGAGA TCCAGGAGGATTTCTCTGTCTCGGAGTAAGAGCGTGAGCGAGATTCTCGCAACGGCGCCGTTTACGCCGGTTGAGTCGCCGCGGTACTCGCTGCAGGGAT TCAATCCGCTGTTTGAATCGGCGGCGGAGGCGGAGCTGAACCGGCTGATATCCTCGCCGCCGCCGAAGTTCAAGTTCATGAGGGACGCCGAGGAGAAGCT GCTCAGACGGCTAATGAAGGAATCCGCCGAGAACAATGGCGGCGGGGGGGTAATGTGGGTGTTTTTGTAA
AA sequence Show only first row Show all	>Lus10004955 pacid=23174856 polypeptide=Lus10004955 locus=Lus10004955.g ID=Lus10004955.BGIv1.0 annot-version=v1.0 MRVSKGGRTRALEILREARRPTRVRAVIVVPTAQLIGPKRLAPALAPHHAAVGAINSQLIRAAGQQIRLTTHDRAAPFSLVWGHGQGDVVPVDERHSDGR SRRISLSRSKSVSEILATAPFTPVESPRYSLQGFNPLFESAAEAELNRLISSPPPKFKFMRDAEEKLLRRLMKESAENNGGGGVMWVFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59350			unknown protein		Lus10004955 [exp]	0	1
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	1.7	0.9832
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	2.0	0.9814
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	5.7	0.9810
AT1G18500		MAML-4, IPMS1	ISOPROPYLMALATE SYNTHASE 1, me...		Lus10019574 [exp]	6.0	0.9697
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	6.9	0.9734
AT2G16060		ATGLB1, ARATHGL...	CLASS I HEMOGLOBIN, hemoglobin...		Lus10005467 [exp]	7.6	0.9529
					Lus10002555 [exp]	8.1	0.9748
AT1G76600			unknown protein		Lus10033761 [exp]	8.5	0.9753
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	8.8	0.9773
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	8.9	0.9780

Compare expression of checked genes

Lus10004955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.