Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12110 722 / 0 ACT11 actin-11 (.1) AT3G53750 721 / 0 ACT3 actin 3 (.1) AT2G37620 721 / 0 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G09810 720 / 0 ACT2/7, ACT7 actin 7 (.1) AT3G46520 716 / 0 ACT12 actin-12 (.1) AT5G59370 715 / 0 ACT4 actin 4 (.1.2) AT3G18780 699 / 0 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT1G49240 697 / 0 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT2G42100 636 / 0 Actin-like ATPase superfamily protein (.1) AT2G42090 532 / 0 ACT9 actin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005457 [exp] 735 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 735 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10016558 [exp] 735 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10029286 [exp] 732 / 0 AT3G46520 768 / 0.0 actin-12 (.1) Lus10016259 [exp] 731 / 0 AT3G46520 767 / 0.0 actin-12 (.1) Lus10005163 [exp] 729 / 0 AT3G12110 766 / 0.0 actin-11 (.1) Lus10001694 [exp] 729 / 0 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005819 [exp] 723 / 0 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 723 / 0 AT5G09810 778 / 0.0 actin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045500 [exp] 734 / 0 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 734 / 0 AT3G12110 767 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 731 / 0 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 730 / 0 AT3G12110 765 / 0.0 actin-11 (.1) Potri.019G010400 [exp] 723 / 0 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 723 / 0 AT5G09810 775 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 720 / 0 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 680 / 0 AT5G09810 731 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 532 / 0 AT5G09810 554 / 0.0 actin 7 (.1) Potri.001G326600 [exp] 327 / 1e-109 AT3G27000 758 / 0.0 WURM, actin related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10004956 pacid=23174834 polypeptide=Lus10004956 locus=Lus10004956.g ID=Lus10004956.BGIv1.0 annot-version=v1.0 ATGGCAGAAGGTGAGGATATCCAGCCACTTGTCTGCGACAATGGAACTGGAATGGTCAAGGCTGGGTTTGCTGGTGATGATGCACCAAGAGCAGTGTTTC CTAGCATCGTTGGTCGTCCTCGCCACACTGGTGTGATGGTCGGGATGGGCCAAAAGGATGCCTATGTTGGAGACGAAGCTCAGTCCAAGAGAGGTATTTT GACTCTGAAGTACCCCATTGAGCATGGTATTGTCAGTAACTGGGACGATATGGAGAAGATCTGGCATCACACGTTCTACAATGAGCTTCGTGTTGCCCCG GAAGAACACCCTGTTCTGCTTACTGAAGCGCCTCTCAATCCTAAGGCTAATCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTCAATACTCCTGCTA TGTATGTCGCCATCCAGGCCGTGCTCTCCCTTTACGCCAGTGGTCGTACTACCGGTATTGTTCTGGACTCTGGTGATGGTGTCAGCCACACGGTCCCAAT TTACGAGGGATACGCACTCCCACACGCAATCCTCCGTCTCGACCTGGCTGGCCGAGACCTCACCGACGCCCTCATGAAGATCCTGACCGAGCGTGGCTAC TCCTTCACCACCACAGCCGAGCGAGGAAACGTAAGAGACATGAAGGAAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNCGTGGCTACTCCTTCACCCCCACAGCCGAGCGAGAAATCGTGAGGGACATGAAGGAGAAGCTAGCCTACATCGCTCTCGACTATGAGCAGGAGCTCGA AACTTCAAAGACCAGCTCCTCGGTCGAGAAGAGCTACGAGCTCCCCGACGGTCAAGTCATAACCATCGGCGCTGAGCGTTTCAGATGCCCCGAGGTGCTC TTCCAGCCCTCGATGATCGGGATGGAAGCTGCTGGGATCCACGAGACTACCTACAATTCGATCATGAAGTGCGACGTGGATATCAGGAAGGATCTGTACG GCAACATCGTTCTCAGTGGTGGTTCCACCATGTTCCCAGGTATTGCTGACAGGATGAGCAAGGAAATCACTGCTTTGGCCCCCAGCAGCATGAAGATCAA GGTCGTTGCTCCACCGGAGAGGAAGTACAGTGTCTGGATCGGAGGATCGATCTTGGCTTCCCTTAGCACCTTCCAGCAGATGTGGATTGCGAAGGCAGAG TACGACGAATCTGGACCGTCCATCGTCCACAGGAAGTGCTTCTAA
AA sequence Show only first row Show all	>Lus10004956 pacid=23174834 polypeptide=Lus10004956 locus=Lus10004956.g ID=Lus10004956.BGIv1.0 annot-version=v1.0 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY SFTTTAERGNVRDMKEKXXXXXXXXXXXXXXXXXRGYSFTPTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVL FQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAE YDESGPSIVHRKCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12110		ACT11	actin-11 (.1)		Lus10004956 [exp]	0	1
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	1.0	0.9660
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10003374 [exp]	2.0	0.9504
AT3G16200			unknown protein		Lus10006829 [exp]	2.2	0.9411
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10006719 [exp]	2.4	0.9439
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	3.5	0.9428
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10010887 [exp]	3.7	0.9360
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	5.2	0.9296
AT1G30630			Coatomer epsilon subunit (.1)		Lus10038422 [exp]	5.7	0.9266
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	6.0	0.9380
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10032817 [exp]	6.9	0.9305

Compare expression of checked genes

Lus10004956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.