Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 238 / 5e-75 Mitochondrial transcription termination factor family protein (.1) AT1G21150 192 / 1e-57 Mitochondrial transcription termination factor family protein (.1) AT1G61980 126 / 2e-32 Mitochondrial transcription termination factor family protein (.1) AT1G61970 125 / 5e-32 Mitochondrial transcription termination factor family protein (.1.2) AT3G46950 122 / 4e-31 Mitochondrial transcription termination factor family protein (.1) AT1G62085 114 / 6e-28 Mitochondrial transcription termination factor family protein (.1) AT1G62120 111 / 4e-27 Mitochondrial transcription termination factor family protein (.1) AT1G61990 111 / 4e-27 Mitochondrial transcription termination factor family protein (.1) AT5G23930 108 / 4e-26 Mitochondrial transcription termination factor family protein (.1) AT1G56380 103 / 2e-24 Mitochondrial transcription termination factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040817 [exp] 447 / 3e-157 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 438 / 5e-154 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 392 / 1e-135 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 281 / 1e-93 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 279 / 4e-93 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1) Lus10040819 [exp] 258 / 2e-84 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1) Lus10040818 [exp] 254 / 1e-82 AT5G07900 129 / 2e-34 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 198 / 1e-59 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10008688 [exp] 167 / 7e-48 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046700 [exp] 265 / 8e-86 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 250 / 6e-80 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 245 / 8e-78 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 238 / 3e-75 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 233 / 4e-73 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 228 / 2e-71 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 228 / 3e-71 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 228 / 3e-71 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.012G046800 [exp] 227 / 6e-71 AT5G07900 228 / 4e-71 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 220 / 2e-68 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10004957 pacid=23174847 polypeptide=Lus10004957 locus=Lus10004957.g ID=Lus10004957.BGIv1.0 annot-version=v1.0 ATGAAATCTATCTTCACCAAATGGCACCTCCATAGCGACGCTTTCCATTTTCTCTTGAACCCTAATTTAGCTTCGTCATTGTCTCCGACGAGGCAACTGT CGAGCAACTCCACCGCTCCCAAACTCACCTTCGCCGTATCTTACCTCATAAACGAATGCGGCGTCCGTCCAGAAACCGCCGTAACGGCAGCCAAATACGT CCGCTTCGATTCCCCTGATAAAGCCAACCTAGTCGTGGCATTCTTCCGCAACCTAGGCTTCACCAAATCTCAAATCCCCAAACTCGTCGGCCGCCGTCCG ATGCTCCTACAATCCGATCCAGAAAAAATCTTCGTCCCTAGATTCCAATTCCTCGAATCCAACGGCTTTTCCCTCTCCGACGTGATCGAACTCCTCTGCA GAGCTCCTGAGATTCTCCACGCCAGCGTGGAGAATCAGCTCCTTCCGAATCTCAACTTCATCAAGTCTCTAATGCCGACCCAGAAGAAAGTAATCGCAGC GGTGAGACGCAGTCCTTATCTGTTAACTTGCGAGCTGGAGACGTATCTGATCCCGAGCATCAACATTCTCCGCGAGAATGGTGCTGGAGAATCGAACATT GTTCGTTTACTCGAGTACCATCCGATGACTCTGATGACTCCAAAAGGCCAGTTCTCGGAGTTGGTCGAGTGCGTGAAGAGGATGGGAGTGGATCCTCGAA TCATAACGTTCGGAGTCGCGGTACAGATAATCCGAGGAGTGCGGAAGGCGACATGGCAGACCAAGGTCGATGCTTACAAGCAATGGGGGTGGTCGGACGA GCTGGTGATCAAGTCGTTTACGAGGGCGCCGTGGTGTATGGGGGTTTCGGTGAAGAAGATCATGGCGAATATGGACTATTTGGTTAACAAAATGGGGTTC GATCCTCTGGAGATTGCTGCGAGGCCTGTGTTGATTTCGTTTAGTTTGAAGAAGAGGATTGTTCCCAGGCATAGTGTTCTGAGTGTGTTGCTGAAGAAAG GGTTGATTAGGGGTGTTAACTCGGCTAATGCATTGGTGGTTACGAATGCGATTTTCGAGCAGAAGTATTTGAAGCCGTTCGAGGCGCAGGCTCCTGAATT GCTGGAGCTGTTTCGCGAAGCGATTCGAGCGTAA
AA sequence Show only first row Show all	>Lus10004957 pacid=23174847 polypeptide=Lus10004957 locus=Lus10004957.g ID=Lus10004957.BGIv1.0 annot-version=v1.0 MKSIFTKWHLHSDAFHFLLNPNLASSLSPTRQLSSNSTAPKLTFAVSYLINECGVRPETAVTAAKYVRFDSPDKANLVVAFFRNLGFTKSQIPKLVGRRP MLLQSDPEKIFVPRFQFLESNGFSLSDVIELLCRAPEILHASVENQLLPNLNFIKSLMPTQKKVIAAVRRSPYLLTCELETYLIPSINILRENGAGESNI VRLLEYHPMTLMTPKGQFSELVECVKRMGVDPRIITFGVAVQIIRGVRKATWQTKVDAYKQWGWSDELVIKSFTRAPWCMGVSVKKIMANMDYLVNKMGF DPLEIAARPVLISFSLKKRIVPRHSVLSVLLKKGLIRGVNSANALVVTNAIFEQKYLKPFEAQAPELLELFREAIRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	0	1
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	2.4	0.8778
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10019864 [exp]	3.5	0.8559
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	4.5	0.8715
AT5G07900			Mitochondrial transcription te...		Lus10008688 [exp]	6.4	0.7863
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	7.1	0.8475
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	7.5	0.8359
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	7.9	0.8313
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	8.3	0.8029
AT2G35790			unknown protein		Lus10023498 [exp]	9.9	0.8168
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	11.0	0.8503

Compare expression of checked genes

Lus10004957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.