Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71830 186 / 1e-55 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 184 / 1e-54 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT3G43740 170 / 2e-53 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT4G33430 179 / 5e-53 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT5G21090 167 / 2e-52 Leucine-rich repeat (LRR) family protein (.1) AT2G13790 168 / 6e-49 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 156 / 2e-44 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT5G10290 104 / 9e-26 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G16000 102 / 3e-25 NIK1 NSP-interacting kinase 1 (.1) AT4G30520 98 / 1e-23 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020962 [exp] 178 / 1e-52 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10002117 [exp] 168 / 2e-52 AT3G43740 273 / 9e-94 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10028716 [exp] 176 / 1e-51 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10026751 [exp] 164 / 1e-51 AT5G21090 250 / 2e-85 Leucine-rich repeat (LRR) family protein (.1) Lus10013902 [exp] 173 / 7e-50 AT1G49870 454 / 2e-145 unknown protein Lus10002579 [exp] 160 / 2e-49 AT5G21090 275 / 3e-94 Leucine-rich repeat (LRR) family protein (.1) Lus10001807 [exp] 150 / 9e-46 AT5G21090 227 / 9e-76 Leucine-rich repeat (LRR) family protein (.1) Lus10042755 [exp] 147 / 2e-44 AT5G21090 199 / 8e-65 Leucine-rich repeat (LRR) family protein (.1) Lus10034350 [exp] 104 / 1e-25 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061700 [exp] 231 / 9e-78 AT1G71830 214 / 2e-66 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 191 / 1e-57 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 188 / 2e-56 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.009G018800 [exp] 178 / 2e-56 AT5G21090 354 / 6e-126 Leucine-rich repeat (LRR) family protein (.1) Potri.019G087700 [exp] 186 / 2e-55 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.001G206700 [exp] 184 / 6e-55 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.013G117200 [exp] 184 / 7e-55 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.003G023000 [exp] 184 / 9e-55 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.001G061600 [exp] 172 / 6e-54 AT5G21090 272 / 2e-93 Leucine-rich repeat (LRR) family protein (.1) Potri.001G219500 [exp] 170 / 2e-53 AT5G21090 348 / 2e-123 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004958 pacid=23174845 polypeptide=Lus10004958 locus=Lus10004958.g ID=Lus10004958.BGIv1.0 annot-version=v1.0 ATGGGGAGGAAATCCAGATGCAGATCAGCTACGACATTAATGCTTCACGTCCTACTTGCCGCTGCATTCGCCATCTCCTCAGTTTACGGCAATGCTGAAG GGGATGCTCTGTATGCGCAGAAGCTGAAGCTAGCGGATCCAAACAACGTTCTTCAGAGCTGGGATCCCACCCTCGTCAACCCCTGCGTCTGGTTCCACGT CACCTGCAACTCGGAAAACTCGGTCGTTAGACTGGACATTGGAGACGCTGGGTTGAGCGGACCTCTCGTGCCACAACTCGGAATGCTGGCCAATCTCCAA TACATGGAGGCGTACGGAAACAAACTGAGTGGAGCGATTCCGGCGCAGCTGGGGAATCTGACCAGGCTGGTTAGCTTGGATCTGTACGGAAACCAACTCA GTGGACCGATTCCGGCTTCTCTCGGAAACTTGCGATCTCTCAGATTCTTGAGGCTGAATAACAACAAGCTGCAGGGGGAACTGCCGGCGGGCTTGGTCAA CCTTGTTTACACGGGGGGTTTGAGGATCATGGATGTCTCCCATAACCTACTGTCAGGAACTGTCCCGGCTCGTAACAAAACAGAACTTGCAATTACAACC ATTACCCGAGACCCAAAAGCGTCTACAAAGTAA
AA sequence Show only first row Show all	>Lus10004958 pacid=23174845 polypeptide=Lus10004958 locus=Lus10004958.g ID=Lus10004958.BGIv1.0 annot-version=v1.0 MGRKSRCRSATTLMLHVLLAAAFAISSVYGNAEGDALYAQKLKLADPNNVLQSWDPTLVNPCVWFHVTCNSENSVVRLDIGDAGLSGPLVPQLGMLANLQ YMEAYGNKLSGAIPAQLGNLTRLVSLDLYGNQLSGPIPASLGNLRSLRFLRLNNNKLQGELPAGLVNLVYTGGLRIMDVSHNLLSGTVPARNKTELAITT ITRDPKASTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Lus10004958 [exp]	0	1
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020493 [exp]	2.0	0.9547
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	10.5	0.9518
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	15.7	0.9436
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	18.5	0.9419
AT2G40600			appr-1-p processing enzyme fam...		Lus10029040 [exp]	21.3	0.9454
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	23.3	0.9496
AT5G06730			Peroxidase superfamily protein...		Lus10008173 [exp]	24.6	0.8966
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	24.8	0.9442
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	25.3	0.9416
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Lus10004399 [exp]	27.5	0.9441

Compare expression of checked genes

Lus10004958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.