Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63920 1049 / 0 TOP3A, AtTOP3alpha topoisomerase 3alpha (.1) AT2G32000 317 / 6e-95 DNA topoisomerase, type IA, core (.1.2) AT4G31210 75 / 2e-13 DNA topoisomerase, type IA, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035035 [exp] 325 / 5e-98 AT2G32000 1363 / 0.0 DNA topoisomerase, type IA, core (.1.2) Lus10021692 [exp] 224 / 5e-62 AT2G32000 1071 / 0.0 DNA topoisomerase, type IA, core (.1.2) Lus10020186 [exp] 67 / 6e-11 AT4G31210 1196 / 0.0 DNA topoisomerase, type IA, core (.1) Lus10026991 [exp] 61 / 3e-09 AT4G31210 490 / 4e-160 DNA topoisomerase, type IA, core (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G067100 [exp] 1191 / 0 AT5G63920 1389 / 0.0 topoisomerase 3alpha (.1) Potri.014G148800 [exp] 312 / 4e-93 AT2G32000 1392 / 0.0 DNA topoisomerase, type IA, core (.1.2) Potri.006G279700 [exp] 62 / 1e-09 AT4G31210 1234 / 0.0 DNA topoisomerase, type IA, core (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0413 [flax] [poplar] Toprim-like PF01751 [flax] [poplar] Toprim Toprim domain CL0167 [flax] [poplar] Zn_Beta_Ribbon PF06839 [flax] [poplar] zf-GRF GRF zinc finger CL0167 [flax] [poplar] PF01131 [flax] [poplar] Topoisom_bac DNA topoisomerase
Representative CDS sequence Show only first row Show all	>Lus10004959 pacid=23174813 polypeptide=Lus10004959 locus=Lus10004959.g ID=Lus10004959.BGIv1.0 annot-version=v1.0 ATGGCGATCACCGTCTTGAATGTGGCTGAGAAGCCTTCGGTAGCGAAGTCGGTCGCCGGAATACTGTCTGGTAACCAACTTCGGATGAGAGAGGGGCGTT CGCGTTACAATAAGATCTACGAGTTCAACTACACCATCAACGGCCAGCCGTGTCACATGCTTATGACTTCGGTTACCGGCCATCTCATGGAGATGGACTT CGACGACCGCTTCCGCAAATGGCACTCTTGCGATCCAGCTGATCTCTATCAAGCTCCCGTTCGTAAGTTCGTTCCCGAGGATAAGCTAGATATAAAGAGG TCACTGGAAGAGGAAGCCAGGAAGTGTCAGTGGCTAGTATTGTGGCTTGATTGCGATAGAGAGGGGGAGAACATTGCATTTGAAGTGGTGGATGTATGTA GGTCAGCCAATTCCCGTCTTACCATCAAGAGGGCTCGATTTTCGTCTTTGATTGACAGGGAAATTCATCAATCTGTTCAGAATCTGGTTGCTCCAAATCA GTTGTTTTCTGATGCTGTTGATGCTAGACAAGAAATTGATCTTCGGATTGGTGCTTCATTCACTAGGTTCCAAACAATGCTGTTGAGAGATAAATTTGTC ATTACTTCTGCCCAGGATGAAAGAAATCTTATCTTAAGTTATGGTCCTTGTCAGTTCCCTACGCTTGGCTTCATTGTAGAACGGTATTGGGAGATACAAT CACATGAGCCTGAAGAGTTTTGGACTATAAACTGCACTTATAACTCTGATGAAGGCAATGCTACTTTCAACTGGATTCGTGGACATCTTTTTGATTACAT TTCTGCAGTTTCCCTATATGAAATGTGTGTCGAGGAACCAACTGCAACAGTGACGAAGGTTCAACAGCAGGAGAAGCTAAAATATCCTCCATATCCTTTG AGCACAATTGAGCTTGAGAAACGATCTTCACGGTACTTCCATATGAGTTCTGAAAAGACCATGAAGGTTGCAGAAGATCTATATCAAGCTGGTTTCATTA GTTATCCTCGTACGGAGACTGATAGCTTTTCTAGCAGGACTGACTTGCAGGCTATTGCACAAGAGCAAGCCGGGCATCCTTCATGGGGTGCATATGCACA AAGGTTGCTAGATCCAGAAGCAGGACTTTGGAGAAACCCTGGTAATGGGGGCCATGATGATAAGGCACATCCACCCATTCATCCAACCAAATATTCTGCC GGTGAGAATAGTTGGAGCCAAGACCACCACAAAAATTACCTGGATGTTTACCGGTTTGAATCCTGGGGGAATTCTGTGCTTCCAACCTTTACTGATGGAC AACAGTTTATTCCAGCCACGCTTACCCTTGATACGGGAGTCACTAGGCCACCACCTTTGCTGAGTGAAGCTGATTTATTAGGCTGTATGGATAAGGGTGA GGCACTTGTAATGGGATACGACGAGATGGGATATGAACTTTGGAAACCAAATCTTAGGTCAATGATGGAGGCTGATATGAAGGAAGTAAGTGTGGGCCAC AAAAGTAAAGCTGACGTGCTCGCTTCTTGCTTACAACAAATGAAAGCTTGCTTCTTAGATGCCAAGTTGAACAGACAAAAACTCTTAGAGGCTATGGCCA TTTTCTTCCAAAGAAGTGATAATTCCGGTCCAGATGACCATTTTGGTAGTGGGGAAATGGTTCGCTTGTGCGGACTATGCCGGGAGTCGAATATGGTGCT GAAGCGAAGCCGGTGCAGGAATGTCGTCTGGCTTCCTGGACCTGTTATGGAGGCCACTGTAACCACCAATACTTGCACTTCCTGCACTCCAGGTCCCGTT TATTTGATCCAGTTCAAGTTTCGCCAGCTCGAAATACCGCCAGGCTTCAATTCTGAGCATTTGGGTTGCGTCGGCGGTTGTGACGAAACTCTCAGGCAGT TGACTGAAATGTGCGGGACTGGTAACCGCGGCCAAGCTGGTAGAGGAAGAGCTACTCAACCAACAACTAGCAACCCCGGACAAGGACAGAATCCTTGTAT TTACTGTAACCAAGCAGGGCACTCTTCAATGGCTTGCCCTTCACGGCAGCAGCAGTCATCATCTCGCGGTGTTCGGGCCCGCGGAACAAATCAACCGAGT GAACAATCTTCACCGTCAGTTTCGTGCAGTACATGTGGATCGCCATGCACGGCGCGAACTGCAAACACCGCAAATAACAGAGGAAGGAGATTCTACTCTT GCAACTCACAAGCTTGCAACTTCTTCGTGTGGGAGGATAGTATTGGAGATGGTGTAGCTCAGAGAAGTGTCCCACCACGACAATCAACTAGTGCCGGAAG CTCTAGCTCGGCAGCACCGAGCACTCGCCGGAGGGGTGGTGGCGGTGGTGGTCGGAGTAACGGCCGAGGAAGTGGAAGAGGAGTACGAAACGGAAATTAT GATGCTACTTTCGTTCCCGCAAGTGAAGCTACATTCGTTTCGGCAACCGGTGAGTCTATATCAGGCGGCAGAAGATGTTACGTGTGTGGCGATCCTTCCC ATTTTGCCAACTCCTGTCCTAACCGAGGTTCCTGA
AA sequence Show only first row Show all	>Lus10004959 pacid=23174813 polypeptide=Lus10004959 locus=Lus10004959.g ID=Lus10004959.BGIv1.0 annot-version=v1.0 MAITVLNVAEKPSVAKSVAGILSGNQLRMREGRSRYNKIYEFNYTINGQPCHMLMTSVTGHLMEMDFDDRFRKWHSCDPADLYQAPVRKFVPEDKLDIKR SLEEEARKCQWLVLWLDCDREGENIAFEVVDVCRSANSRLTIKRARFSSLIDREIHQSVQNLVAPNQLFSDAVDARQEIDLRIGASFTRFQTMLLRDKFV ITSAQDERNLILSYGPCQFPTLGFIVERYWEIQSHEPEEFWTINCTYNSDEGNATFNWIRGHLFDYISAVSLYEMCVEEPTATVTKVQQQEKLKYPPYPL STIELEKRSSRYFHMSSEKTMKVAEDLYQAGFISYPRTETDSFSSRTDLQAIAQEQAGHPSWGAYAQRLLDPEAGLWRNPGNGGHDDKAHPPIHPTKYSA GENSWSQDHHKNYLDVYRFESWGNSVLPTFTDGQQFIPATLTLDTGVTRPPPLLSEADLLGCMDKGEALVMGYDEMGYELWKPNLRSMMEADMKEVSVGH KSKADVLASCLQQMKACFLDAKLNRQKLLEAMAIFFQRSDNSGPDDHFGSGEMVRLCGLCRESNMVLKRSRCRNVVWLPGPVMEATVTTNTCTSCTPGPV YLIQFKFRQLEIPPGFNSEHLGCVGGCDETLRQLTEMCGTGNRGQAGRGRATQPTTSNPGQGQNPCIYCNQAGHSSMACPSRQQQSSSRGVRARGTNQPS EQSSPSVSCSTCGSPCTARTANTANNRGRRFYSCNSQACNFFVWEDSIGDGVAQRSVPPRQSTSAGSSSSAAPSTRRRGGGGGGRSNGRGSGRGVRNGNY DATFVPASEATFVSATGESISGGRRCYVCGDPSHFANSCPNRGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10004959 [exp]	0	1
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	2.4	0.9481
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	3.7	0.9552
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10000854 [exp]	8.5	0.9352
AT3G54750			unknown protein		Lus10016201 [exp]	9.0	0.9290
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10011131 [exp]	10.9	0.9239
AT4G02110			transcription coactivators (.1...		Lus10010017 [exp]	12.5	0.9308
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10022136 [exp]	13.9	0.9183
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	14.2	0.9374
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10041515 [exp]	15.5	0.9320
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	15.7	0.9301

Compare expression of checked genes

Lus10004959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.