Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004960 pacid=23174824 polypeptide=Lus10004960 locus=Lus10004960.g ID=Lus10004960.BGIv1.0 annot-version=v1.0 ATGGATAATCACAAAGCTAAAAGGAAAAATTATTCCTTCTTTCCTTCGGGAAAACATTATTTCCCCTCTGCCGAAGTCAAAGTTCTGCGCTTGTTCTCCG CATTTCGCCGACCAACCTGTCGCCCGGAGTATCGCAGAAATCTAGTTTCCGGCCAGTCTTCTTCCATCTTTATCAACCGAAGATCAAGCCTTTCTGCATC GTCCCCTCAACATCACCGGCTGCTATCCGAACTGCCTTGCAACCCACAGCTGAAAGGAAAACACGAATCGGATTCACGTTACCGATTTGAAGCGGATCCT CCTGGTTCCAGAACTCTACATCTTCTGATCCCTCCATCAATCTCTGCTGGTAACTTGGCAAATGCAGTGTTAGTTCATGCACCTTATGCTAGTCTAGAGA ATCCTTATGAGTTTACAAGTCTGGAGTTTAGCTCGCTAGGCTGTAGAGCAGAAAATGTGGAAGTTCATGTATGA
AA sequence Show only first row Show all	>Lus10004960 pacid=23174824 polypeptide=Lus10004960 locus=Lus10004960.g ID=Lus10004960.BGIv1.0 annot-version=v1.0 MDNHKAKRKNYSFFPSGKHYFPSAEVKVLRLFSAFRRPTCRPEYRRNLVSGQSSSIFINRRSSLSASSPQHHRLLSELPCNPQLKGKHESDSRYRFEADP PGSRTLHLLIPPSISAGNLANAVLVHAPYASLENPYEFTSLEFSSLGCRAENVEVHV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004960 [exp]	0	1
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	2.8	0.8498
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10006130 [exp]	3.7	0.8528
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Lus10018237 [exp]	4.5	0.8149
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10034135 [exp]	5.1	0.8048
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10005458 [exp]	9.3	0.8482
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032208 [exp]	20.5	0.7190
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	20.7	0.8124
AT3G01130			unknown protein		Lus10042059 [exp]	23.2	0.8349
AT2G16940			Splicing factor, CC1-like (.1....		Lus10034466 [exp]	26.7	0.8428
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	30.5	0.8446

Compare expression of checked genes

Lus10004960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.