Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28910 168 / 2e-49 CXIP4 CAX interacting protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005458 [exp] 223 / 6e-71 AT2G28910 184 / 9e-56 CAX interacting protein 4 (.1) Lus10040809 [exp] 177 / 3e-53 AT2G28910 210 / 7e-66 CAX interacting protein 4 (.1) Lus10016543 [exp] 176 / 5e-53 AT2G28910 213 / 6e-67 CAX interacting protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148000 [exp] 176 / 6e-53 AT2G28910 199 / 2e-61 CAX interacting protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004961 pacid=23174831 polypeptide=Lus10004961 locus=Lus10004961.g ID=Lus10004961.BGIv1.0 annot-version=v1.0 ATGCCAGCCACAGCTGGAAGGGTCCGCATGCCGGCCAACAATAGAGTACACAGCAGCGCCGCCCTTCAAACCCACGGTATATGGCAAAGTGCAATCGGAT ACGATCCCTACGCACCAAACAAGGACGACTCGAAAGCTGCCGCGTCACAGCACAATGCATCGTCATCATCCGCTCCCACTGCCGCAGAAGCCGATGGCGA AAATGCTTACGATAGCTTCCAAGGTCTCCTGGCTCTTGCACGAATTACCGGGGGCTCTAATGCCGATGAGGTTCGTGGATGCTGCAAGAGATGCGGACGT GTGGGGCACCTTTCTTATCAGTGTCGGAACTTTCTTAGCACGAAGGACAGTGTGAAGGAGGAGCCGGATGCTTTGTCGGGTTTGAACGGATTGAACGGAA AAGGGAAGAGTAAAACCAAAGACAGTGACGAAGAAGATGAGGAGAGTGAGACTTCTGATTCGGATGTGGATCCCGAGATTGAGAGGATTATTGCTGCAAG GCTGGGAAAGAAGAGTAGTGGGAAGAGAAAGTCGTCTTCTAGGAATAAGAAGAGGAAGGAAGATTCTGATGGAGACAATTCCGATTCTGATTCCGACTCC GGAAAGAGGAGAAAGACAAAGTCCTCTTCTAGGAAGAAGATGAATAAGGAGGAAGATTCCTCAGATTCTGATTCCGGAAAGAGGAGTAAGAGAGGGAGGT CGAGGAAAAGACGGAGCAAGAAGAAGGAAAGCAGCGAGTCAGAAGACGAAGGTAGGCGTAGGAAGGAGAAGAGGAGGAAGAGAGATGAGTCTTCTGACGA AGAGGATGAAGACCGTCGTAGGCACAAGAGGAAGAGTAGGAAGGAGAAGAGGAGGAGACGGAGCCATCGATATTCTGACGATTCGGATACTGATAGGAGG AAGAGCAGGAGGGCGGATGCAGGTTCTTCGGATTCGAAGCACGAAAGGAGAGTGGATAGAGAATGA
AA sequence Show only first row Show all	>Lus10004961 pacid=23174831 polypeptide=Lus10004961 locus=Lus10004961.g ID=Lus10004961.BGIv1.0 annot-version=v1.0 MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDSKAAASQHNASSSSAPTAAEADGENAYDSFQGLLALARITGGSNADEVRGCCKRCGR VGHLSYQCRNFLSTKDSVKEEPDALSGLNGLNGKGKSKTKDSDEEDEESETSDSDVDPEIERIIAARLGKKSSGKRKSSSRNKKRKEDSDGDNSDSDSDS GKRRKTKSSSRKKMNKEEDSSDSDSGKRSKRGRSRKRRSKKKESSESEDEGRRRKEKRRKRDESSDEEDEDRRRHKRKSRKEKRRRRSHRYSDDSDTDRR KSRRADAGSSDSKHERRVDRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	0	1
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10005458 [exp]	1.4	0.9270
AT1G17030			unknown protein		Lus10024442 [exp]	5.3	0.8461
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10034135 [exp]	5.9	0.8134
AT3G22660			rRNA processing protein-relate...		Lus10037050 [exp]	7.9	0.8724
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10002733 [exp]	8.5	0.8642
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10030470 [exp]	10.5	0.8127
AT5G64140		RPS28	ribosomal protein S28 (.1)		Lus10013543 [exp]	10.8	0.8175
AT5G13070			MSF1-like family protein (.1)		Lus10031832 [exp]	13.9	0.8410
AT5G49210			unknown protein		Lus10036792 [exp]	14.0	0.8180
AT5G49210			unknown protein		Lus10037138 [exp]	15.1	0.8483

Compare expression of checked genes

Lus10004961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.