Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24318 462 / 6e-161 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G55430 439 / 7e-152 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 414 / 4e-141 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 395 / 1e-133 O-Glycosyl hydrolases family 17 protein (.1) AT3G46570 384 / 2e-131 Glycosyl hydrolase superfamily protein (.1) AT2G39640 389 / 1e-130 glycosyl hydrolase family 17 protein (.1) AT2G05790 355 / 1e-118 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 352 / 2e-117 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 336 / 2e-111 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 297 / 1e-96 Glycosyl hydrolase family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040808 [exp] 678 / 0 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 676 / 0 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10005459 [exp] 633 / 0 AT5G24318 341 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 459 / 8e-160 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10021088 [exp] 434 / 3e-151 AT5G24318 324 / 3e-108 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 426 / 1e-146 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 387 / 1e-131 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023576 [exp] 381 / 9e-129 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 380 / 3e-128 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240000 [exp] 613 / 0 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G056000 [exp] 495 / 1e-173 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 489 / 1e-171 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 473 / 3e-165 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G203800 [exp] 410 / 4e-140 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 404 / 7e-138 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 404 / 8e-138 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 390 / 2e-132 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 361 / 8e-121 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 357 / 4e-119 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10004962 pacid=23174848 polypeptide=Lus10004962 locus=Lus10004962.g ID=Lus10004962.BGIv1.0 annot-version=v1.0 ATGGCGATTTCTCCGATCCTCCTCCTCCTCTCACTTCAAATCCTCCTACCTCCGCCACCAACCGCCGCCTACTCAATCGGAGTAAACTACGGCACCTTAG CCAACAACCTCCCACCCCCATCCCAAGTATCCTCATTCCTCAAATCCAAAACCACAATCGACCGAGTCAAAATCTTCGACGCCAATCCAGACATCCTCCG CGCCTTCTCCGACACCGGAATCTCTGTCACCATCACAATCGCCAACGCCGACGTCCCGTCCTTATCCAAACTCCCCGCCGCCCAAACCTGGATCCAAACA AACATCCACCCCTTCCACCCCAAAACCAAAATCCGATACATCCTAATCGGAAACGAAGTCCTCTACTGGAAGGACAGGAACGTAATTGCACACACCCTCC CCGCCTTGAAAACCGTGCACCGCGCTTTACAGCTCGCAAATCTCACGGACGTCATCAAAGTCACCACCCCCCACGCTTTCTCCTTCCTCGCCGCGTCCCG GCCGGCCAGTACCGGCCGGTTCAGGCGCTTCGATGCGGCGATCCTCCGCCCGATATTGGACTTCCATCTCCGGACGAGGACTCCGTTCATGGTGAATCCG TACCCGTTCTTCAGCTTTGGCACCGCCGACATGCTGGATTACGCGGTTTTCCGGCCAAACAAGGGGATATACGATAGAGCTACTGGGAAGTGGTATACGA ATCTTTTCGACGAGTTGATGGATGCGGCATATTCGGCGATGAAGAAGCTTGACGCTAGATTTGGAGATGTGGAGATTGTGATTGGGGAGACGGGTTGGCC GTCGGCGGGTGACCCGAACCAGCTGGGAGTCGGGTGGGAGAATGCGGTGTCGTATAATGGGAATTTGGTGAAGCATTTGAGATCGGGGAGAGGGACGCCG TTGATGCCGAATCGGACTTTCGAGACTTACGTGTTTGCTCTGTTTAACGAGAATCTGAAGCCTTCTGTCTCCGAGCAAAATTACGGTCTTTTCAGGCCGG ATTTGACCGCCGTCTACGACGTCGGCATTTTGCGCAGTCCGCAGGCCCAATCGCCGCCAGCAAACGGCGGAAGAGTCCCGGCGAAATCGCCGCCGGCCGG CCACAAGTGGTGCGTGCCGAGATCGGACGCTAGCGACGAAGCGCTGCAGAGGAATCTGGACTACGTGTGCAGCTCGGGAGTAGATTGCCAGCCGATACAG AAAGGCGGCGCGTGTTTCAACCCGAATACGGTCCGATCGCACGCTTCCTATGCGATGAACGCCTACTACCAGCGATCCGGCAGACACGATTCCGACTGTG ACTTTGGCCGCACTGGATTCCTAACCTCCGACAATCCAAGCTACCAGGCGTGCAGCTTCGCTTCGATAGAGAGCTGA
AA sequence Show only first row Show all	>Lus10004962 pacid=23174848 polypeptide=Lus10004962 locus=Lus10004962.g ID=Lus10004962.BGIv1.0 annot-version=v1.0 MAISPILLLLSLQILLPPPPTAAYSIGVNYGTLANNLPPPSQVSSFLKSKTTIDRVKIFDANPDILRAFSDTGISVTITIANADVPSLSKLPAAQTWIQT NIHPFHPKTKIRYILIGNEVLYWKDRNVIAHTLPALKTVHRALQLANLTDVIKVTTPHAFSFLAASRPASTGRFRRFDAAILRPILDFHLRTRTPFMVNP YPFFSFGTADMLDYAVFRPNKGIYDRATGKWYTNLFDELMDAAYSAMKKLDARFGDVEIVIGETGWPSAGDPNQLGVGWENAVSYNGNLVKHLRSGRGTP LMPNRTFETYVFALFNENLKPSVSEQNYGLFRPDLTAVYDVGILRSPQAQSPPANGGRVPAKSPPAGHKWCVPRSDASDEALQRNLDYVCSSGVDCQPIQ KGGACFNPNTVRSHASYAMNAYYQRSGRHDSDCDFGRTGFLTSDNPSYQACSFASIES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	0	1
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	2.0	0.9064
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	2.0	0.8981
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	2.2	0.8752
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	2.4	0.8808
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	3.2	0.8632
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	4.5	0.8800
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	4.6	0.8691
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10001668 [exp]	5.5	0.8739
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	6.0	0.8644
AT5G17560			BolA-like family protein (.1)		Lus10020347 [exp]	8.7	0.8566

Compare expression of checked genes

Lus10004962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.