Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55440 387 / 3e-134 CYTOTPI, ATCTIMC, TPI CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) AT2G21170 270 / 3e-87 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) AT5G59380 103 / 2e-25 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1) AT3G46580 99 / 6e-24 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005461 [exp] 439 / 1e-154 AT3G55440 454 / 4e-164 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10040807 [exp] 423 / 3e-148 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10016538 [exp] 423 / 3e-148 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10007575 [exp] 275 / 3e-89 AT2G21170 466 / 2e-167 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10012171 [exp] 272 / 2e-88 AT2G21170 481 / 5e-173 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10005460 [exp] 265 / 1e-87 AT5G59380 101 / 1e-27 methyl-CPG-binding domain 6 (.1) Lus10005888 [exp] 48 / 1e-05 AT5G59800 123 / 5e-32 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10014989 [exp] 45 / 8e-05 AT5G52230 86 / 4e-17 methyl-CPG-binding domain protein 13 (.1.2) Lus10038869 [exp] 44 / 0.0004 AT5G52230 82 / 4e-16 methyl-CPG-binding domain protein 13 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031200 [exp] 383 / 2e-132 AT3G55440 358 / 4e-126 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.001G240300 [exp] 375 / 3e-129 AT3G55440 377 / 1e-133 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.010G203500 [exp] 374 / 8e-129 AT3G55440 419 / 5e-150 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.008G056300 [exp] 372 / 2e-128 AT3G55440 400 / 1e-142 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.009G129500 [exp] 276 / 1e-89 AT2G21170 479 / 8e-172 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.004G168000 [exp] 274 / 5e-89 AT2G21170 489 / 5e-176 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.009G031100 [exp] 136 / 2e-37 AT3G46580 110 / 2e-30 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.001G240100 [exp] 135 / 5e-37 AT3G46580 117 / 7e-33 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.009G027600 [exp] 71 / 9e-14 AT5G59800 96 / 3e-23 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Potri.015G140100 [exp] 51 / 1e-06 AT5G52230 81 / 2e-15 methyl-CPG-binding domain protein 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain CL0036 [flax] [poplar] TIM_barrel PF00121 [flax] [poplar] TIM Triosephosphate isomerase
Representative CDS sequence Show only first row Show all	>Lus10004963 pacid=23174852 polypeptide=Lus10004963 locus=Lus10004963.g ID=Lus10004963.BGIv1.0 annot-version=v1.0 ATGTCGAACTCCAAAGCTACGCCGCAGCGCTTCACCGAGCCGGAAATCCCTAACCCTGCCGCCGCCGCCACCAACAGCAACAAATCGCCCAACCTTGCAT CGCCGGATCCGCTCCTCCGAGATGGCGCCTTCATTGATCCCGCCTCCGTCCCTCAAACCACTCCGCCTAGCTCTTCCTCAGCTAACGGCGCCTCGGCGGA GCCTACTTCTAAACCGCGCGGGAGAGTGTTTGAGATGAGCTGGCTTCCGCAGGGATGGCTGGTGGAGGAACGAGTTAGATGTTCTGGTGGAACCGCCGGT ACGGTTGATAAGTACTACTTCGATCCTACCTCAGGTCGTCGGTTCAGGTCCAAGCGAGAAGTGCAGAACTTTCTGGAGACAGGATCGAAGCGAAAGAAAC CGCCCGAGAACTCCGATGCTAATGCCAATTCTTCAGAGGGCACTCCCAGTAGTAGTACGAAGAAGAAGAGCAAGAAGCCACCAAAGCAAATCAAAGTAGC TTCTCATCTGGACTTCAACTTCTCGAACGTGCCGGAAAGCGTCGAGTGGGTTCTCGCAGATTCGAAAAGCGGGGCGTGGAATCCGTTCGTATCGGGTAAG AAGCCCCCCGATTCCGAGAGGGAAGTATGGGACGTTACGTTCAAGTATCTTGCTGCTAGGAGTGTAGAATATACAACCAAAGGAAAGCTTCCGAATGGCA CAAGCGAGGAGGTTAAGAAGATCGTCACTCTTCTGAACGAAGCCGAAGTTCCTTCTGAAGATGTCGTCGAAGTTGTTGTCAGTCCCCCATACGTGTTCCT TCCTGTGGTTAAAAGTCTGCTAAGGCCTGACTTCAAGGTTGCTGCCCAGAATTGCTGGGTTCGCAAGGGTGGTGCTTTCACTGGAGAAGTTAGTGCTGAG ATGCTTGTGAATTTGGACATTCCCTGGGTCATTCTTGGTCACTCTGAGAGGCGAGCTCTCCTGAATGAGTCAGATGAGTTTGTTGGTGACAAGGTTGCAT ATGCACTAGGACAAGGGTTGAAAGTGATTGCCTGTATTGGTGAGACACTCGAGCAAAGAGAGTCCGGATCAACACTGGCTGTTGTCTCTGCTCAAACCAA AGCAATTGCAGAGAAGATCAAAAGCTGGGACAATGTAGTTTTGGCTTACGAGCCAGTTTGGGCCATCGGTACCGGAAAGGTTGCCTCTCCAGCTCAGGCT CAGGAAGTCCATGCTGAATTAAGGAAGTGGCTTAATGACAATGTCAGTGCTGAAGTAGCTCAATCAACCAGAATCATCTATGGCGGTTCTGTTAATGGTG GAAACTGCAAAGAGTTGGGAGGACAAACCGACGTTGACGGATTCTTGGTTGGCGGAGCTTCTCTAAAGCCCGAGTTCATCGACATCATCAAGGCTGCGAC TGTCAAGAAGAGCGCTTGA
AA sequence Show only first row Show all	>Lus10004963 pacid=23174852 polypeptide=Lus10004963 locus=Lus10004963.g ID=Lus10004963.BGIv1.0 annot-version=v1.0 MSNSKATPQRFTEPEIPNPAAAATNSNKSPNLASPDPLLRDGAFIDPASVPQTTPPSSSSANGASAEPTSKPRGRVFEMSWLPQGWLVEERVRCSGGTAG TVDKYYFDPTSGRRFRSKREVQNFLETGSKRKKPPENSDANANSSEGTPSSSTKKKSKKPPKQIKVASHLDFNFSNVPESVEWVLADSKSGAWNPFVSGK KPPDSEREVWDVTFKYLAARSVEYTTKGKLPNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPVVKSLLRPDFKVAAQNCWVRKGGAFTGEVSAE MLVNLDIPWVILGHSERRALLNESDEFVGDKVAYALGQGLKVIACIGETLEQRESGSTLAVVSAQTKAIAEKIKSWDNVVLAYEPVWAIGTGKVASPAQA QEVHAELRKWLNDNVSAEVAQSTRIIYGGSVNGGNCKELGGQTDVDGFLVGGASLKPEFIDIIKAATVKKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10004963 [exp]	0	1
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10005461 [exp]	1.0	0.9076
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	3.5	0.8546
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10041144 [exp]	5.7	0.8572
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	9.1	0.8660
AT3G58730			vacuolar ATP synthase subunit ...		Lus10038979 [exp]	9.5	0.8403
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10038691 [exp]	11.7	0.8349
AT4G21105			cytochrome-c oxidases;electron...		Lus10006276 [exp]	13.0	0.8043
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10013859 [exp]	15.8	0.7768
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	17.5	0.8465
AT3G58730			vacuolar ATP synthase subunit ...		Lus10027271 [exp]	18.2	0.7661

Compare expression of checked genes

Lus10004963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.