Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28930 537 / 0 APK1B protein kinase 1B (.1.2.3) AT1G07570 531 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 473 / 8e-167 NAK Protein kinase superfamily protein (.1.2) AT2G39660 437 / 9e-153 BIK1 botrytis-induced kinase1 (.1) AT2G02800 424 / 3e-147 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 415 / 1e-143 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G55450 405 / 4e-140 PBL1 PBS1-like 1 (.1.2) AT1G69790 399 / 7e-138 Protein kinase superfamily protein (.1) AT5G15080 394 / 2e-134 Protein kinase superfamily protein (.1) AT1G26970 391 / 3e-134 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005462 [exp] 792 / 0 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3) Lus10016537 [exp] 590 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10040806 [exp] 578 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10024391 [exp] 502 / 3e-178 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 499 / 5e-177 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 495 / 5e-176 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 486 / 1e-171 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 482 / 3e-170 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012850 [exp] 419 / 6e-145 AT2G02800 614 / 0.0 protein kinase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240400 [exp] 575 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 571 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.016G094300 [exp] 510 / 0 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 483 / 1e-170 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 483 / 3e-170 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G093700 [exp] 440 / 2e-153 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 439 / 5e-153 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.007G062700 [exp] 398 / 8e-137 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.008G194700 [exp] 397 / 1e-135 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 395 / 1e-134 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10004964 pacid=23174855 polypeptide=Lus10004964 locus=Lus10004964.g ID=Lus10004964.BGIv1.0 annot-version=v1.0 ATGGGGGTTTGCTTAAGCGCTCAGATTAAAGCTGCTAGCAGCAGCCAATTCAATTCCGGGGCAACTCCGAAGTATGTAAGCGATTATGCCACCGGTTCAG ACAAAGAACCGAGTTCGAATCCAGCCGCATCTCCAAAGAGGAGCGAGGGAGAGATCTTGCAGTCCCCGAATCTGAAGATCTTCAGTTACTCAAACCTGAA ACTCGCCACAAGGAACTTTTGTGCTAATAGCGTGGTAGGGGAAGGCGGATTCGGTTCGGTGTTCAAAGGATGGATCGACGAGAATACTTACACTGCAACG AAGCCTGGAACTGGAATGGTTGTAGCTGTCAAGAAACTGAAGCAAGAGAGCTTCCAAGGTCATCAGGAATGGCTTGCGGAAGTGAATTACTTGGGACAGT TTTCTCATCCTCACTTGGTGAAGCTGTTGGGATACTGCTTGGAAGACGAACACCGCCTTCTGGTTTATGAGTTCTTGCCTCGGGGGAGCTTGGAGAATCA TCTGTTCAGAAGAGGTTCGTATTTCCAGCCGCTTTCGTGGAAACTAAGGCTGAAAGTAGCTCATGCTGCGGCCGAGGGACTTGCTTTCCTTCACAGCTCT GAAGCGAAGGTCATCTATAGGGATTTCAAGACTTCCAACATTCTGCTTGATACTAATTATGATGCTAAACTCTGCGACTTCGGGTTGGCCAAAGATGGGC CGACGGGCGACAAGAGTCATGTAACTACCAGGGTCATGGGAACCCATGGATATGCTGCTCCAGAGTACTTAGCCACAGGGCATCTAACTGCGAAGAGCGA CGTGTACAGCTATGGAGTGGTCTTACTCGAGATGCTATCCGGAAGGAGAGCGATCGACAAGAACCGGCCATCGGGGGAACACAACCTGGTCGAGTGGGCG AAGCCGTACCTGGCGCACAAGCGCAAGACGTTACGAATATTGGACAACCGCCTCGAAGGGCAGTACACGTTGGAAGTTGCCTTCAAGGTGGCCGTGCTTG CTCACCGCTGCATTTCCGTGGAGGCCAAGTTACGCCCGAGTATGGATGAGGTGGTGGCCACGTTAGAAGAGATTCGCCAATCGAATGAGATTACGATGAG CAATGCGAGTTACGAGGCACCGAGGTCGCGAAGAAGAAGCCCGGGTGATGCTGGTTGTGGCGGGGAGGTTTCTTCTTCTTATCCCCGGCCTTCTGGTTCT CCTTTGTATGCTTCGGTTGGGAAAGCTTAG
AA sequence Show only first row Show all	>Lus10004964 pacid=23174855 polypeptide=Lus10004964 locus=Lus10004964.g ID=Lus10004964.BGIv1.0 annot-version=v1.0 MGVCLSAQIKAASSSQFNSGATPKYVSDYATGSDKEPSSNPAASPKRSEGEILQSPNLKIFSYSNLKLATRNFCANSVVGEGGFGSVFKGWIDENTYTAT KPGTGMVVAVKKLKQESFQGHQEWLAEVNYLGQFSHPHLVKLLGYCLEDEHRLLVYEFLPRGSLENHLFRRGSYFQPLSWKLRLKVAHAAAEGLAFLHSS EAKVIYRDFKTSNILLDTNYDAKLCDFGLAKDGPTGDKSHVTTRVMGTHGYAAPEYLATGHLTAKSDVYSYGVVLLEMLSGRRAIDKNRPSGEHNLVEWA KPYLAHKRKTLRILDNRLEGQYTLEVAFKVAVLAHRCISVEAKLRPSMDEVVATLEEIRQSNEITMSNASYEAPRSRRRSPGDAGCGGEVSSSYPRPSGS PLYASVGKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10004964 [exp]	0	1
AT3G18930			RING/U-box superfamily protein...		Lus10012033 [exp]	6.5	0.8911
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	7.4	0.8987
AT3G20310	AP2_ERF	ATERF7, ATERF-7	ethylene response factor 7 (.1...		Lus10043182 [exp]	9.2	0.8924
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10028830 [exp]	12.6	0.8690
AT4G29780			unknown protein		Lus10011946 [exp]	13.7	0.8893
AT4G33920			Protein phosphatase 2C family ...		Lus10002110 [exp]	15.9	0.8832
AT4G27280			Calcium-binding EF-hand family...		Lus10031588 [exp]	16.7	0.8798
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	17.0	0.8889
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	17.3	0.8867
AT3G48040		ROP10, ARAC8, A...	Arabidopsis RAC-like 8, RHO-re...		Lus10034876 [exp]	18.8	0.8060

Compare expression of checked genes

Lus10004964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.