Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29050 401 / 4e-139 ATRBL1 RHOMBOID-like 1 (.1.2) AT3G53780 330 / 5e-111 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT1G63120 299 / 3e-100 ATRBL2 RHOMBOID-like 2 (.1) AT5G07250 268 / 1e-87 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G12750 263 / 3e-86 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT1G52580 235 / 4e-75 ATRBL5 RHOMBOID-like protein 5 (.1) AT1G77860 197 / 8e-60 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT4G23070 193 / 6e-59 ATRBL7 RHOMBOID-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005464 [exp] 513 / 0 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10023789 [exp] 365 / 8e-125 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 367 / 2e-121 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10024497 [exp] 314 / 6e-106 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 313 / 2e-105 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10027436 [exp] 269 / 2e-87 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10003743 [exp] 214 / 5e-66 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10028036 [exp] 213 / 3e-65 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10022969 [exp] 43 / 0.0003 AT1G25290 309 / 3e-104 RHOMBOID-like protein 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G241300 [exp] 412 / 9e-144 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.009G031900 [exp] 409 / 2e-142 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 392 / 1e-135 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 325 / 4e-110 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.015G142000 [exp] 302 / 4e-101 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.001G108700 [exp] 296 / 7e-99 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.012G139600 [exp] 284 / 8e-94 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.002G090400 [exp] 201 / 1e-60 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10004965 pacid=23174846 polypeptide=Lus10004965 locus=Lus10004965.g ID=Lus10004965.BGIv1.0 annot-version=v1.0 ATGGGGAGAAGAAGGAATTCGAGCGCCTACAAAATCGACGTGGGCGACGACGACCGGCGGCGGAACAACGACGACTTCAAGCCGTTCAAGCAGTGGTTCC CTTGGCTGATTCCGTCGTTCGTTGCCGCCAATTGCGTGTTGTTCGTCGTCGTAATGTACATTAATGATTGCCCCAAACACTCGAGGGATTGCATCGGCGT TGAATTCTTGGGGAGATTCGCTTTCCAGCCGTTGAAGGAGAATCCTCTCCTCGGCCCTACCTCCGACGCGTTGATGAAACTGGGAGCAATGGAAGTGGAA AAAGTGGTGAAAGGGCACCAACCATGGCGTTTGATGTCTTGCATTTGGTTGCATGCTGGGGTCTTCCATTTGCTTGCCAACATGCTTAGTCTCTTGTTCA TTGGCATCCATCTTGAGCAAGAATTCGGGTTTATTCGAATAGGGGTGGTCTACCTTCTTTCCGGATTCGGAGGAAGTGTGATGTCAGCTCTCTTCCTCCA GTTAGGCATCTCGGTTGGTGCTTCCGGTGCCCTTTTTGGGTTACTCGGCGCCATGCTCTCGGAGCTCATCACAAACTGGACAATATATGCAAATAAGTGT GCAGCATTGTTGACTCTTGTCATCATTGTGGTACTGAACTTAGCAGTAGGGATTCTCCCGCACGTCGATAATTTCGCGCACATCGGGGGTTTCGTATCCG GTTTCCTACTCGGTTTCATTTTCTTGATCCGGCCACAGTTTGGTTGGGTTAGCCAGAAGACTTGTCCTCCAGGCTTCACTGCACCCCCTGCTAAATCAAA GTACAAGGTGTATCAGTACTTCCTCCTTGCTCTAGCACTGATACTTTTGCTGTCCGGATTCGCCATTGCGCTGTACGATCTTTTCAAAGGAGTCGATGTG AATGAACACTGCCCTTGGTGTCAATACCTGACCTGCATTCCTACACCATTGTGGAGTTGCAAATCACCCAAAGTTTACTGTGAGTCATCGCAATTCGGAC TTCAATTGAACCTGACATGCATGTCAACTGGAAAAAGTGGGATCTATATTCTTCCAGATGATAACCCTGCACATGCTCAAGTACTGTGTTATGAGCTTTG CCAATGA
AA sequence Show only first row Show all	>Lus10004965 pacid=23174846 polypeptide=Lus10004965 locus=Lus10004965.g ID=Lus10004965.BGIv1.0 annot-version=v1.0 MGRRRNSSAYKIDVGDDDRRRNNDDFKPFKQWFPWLIPSFVAANCVLFVVVMYINDCPKHSRDCIGVEFLGRFAFQPLKENPLLGPTSDALMKLGAMEVE KVVKGHQPWRLMSCIWLHAGVFHLLANMLSLLFIGIHLEQEFGFIRIGVVYLLSGFGGSVMSALFLQLGISVGASGALFGLLGAMLSELITNWTIYANKC AALLTLVIIVVLNLAVGILPHVDNFAHIGGFVSGFLLGFIFLIRPQFGWVSQKTCPPGFTAPPAKSKYKVYQYFLLALALILLLSGFAIALYDLFKGVDV NEHCPWCQYLTCIPTPLWSCKSPKVYCESSQFGLQLNLTCMSTGKSGIYILPDDNPAHAQVLCYELCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10004965 [exp]	0	1
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	6.8	0.9735
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10034371 [exp]	9.9	0.9642
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10037040 [exp]	12.1	0.9634
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	14.0	0.9631
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	15.7	0.9620
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	17.1	0.9620
					Lus10038594 [exp]	18.5	0.9620
AT1G06260			Cysteine proteinases superfami...		Lus10041788 [exp]	19.8	0.7429
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Lus10040467 [exp]	19.8	0.9620
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	21.0	0.9620

Compare expression of checked genes

Lus10004965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.