Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15470 46 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 46 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003206 [exp] 258 / 2e-83 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 197 / 3e-60 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 124 / 2e-33 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 123 / 4e-33 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039934 [exp] 49 / 4e-07 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027671 [exp] 49 / 6e-07 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144400 [exp] 78 / 4e-17 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 70 / 2e-14 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 59 / 2e-10 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G122500 [exp] 48 / 6e-07 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 48 / 7e-07 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004966 pacid=23174833 polypeptide=Lus10004966 locus=Lus10004966.g ID=Lus10004966.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCATGAAAGAAGATAGATTCTTTGATTCTAGAGAAGAGATGTCTGATTTTGCCGCCGCCGGCGGTGTTGGTAATTTCCTGATTTGGACTG ACAGGAATCTCGACAGTGTCCAGGATCGGCGGCACAGCTTCCTCACATGGATGGATCTGAGTTCTGATACGGTGTCGGATTCCGAAGCCCTGCAATCGGG GGTTGAAATTGATAACGGCGGCGGCGGCGCAATATTTAGAAGTTGTGATTCGGAAGATCACGATGGGTTCTGTTCCGACAATACTAATTTGTCTCGCGCT ACTTCTTTTCACTCAGCTGAAGCTCGGGAGTCCTTCCAGGATAAGGATTTCGTGTGCAAGATTCGAAATTTAGACGACGGGAGGGAGTTGGTCGTCGAAG AGCTGGACCAAGACGGAATCTTTGGGAAATTCCGGGAAGTGGGCTCCGCCAATCAATCCCTAACCTTGGAAGTAACAAATTGA
AA sequence Show only first row Show all	>Lus10004966 pacid=23174833 polypeptide=Lus10004966 locus=Lus10004966.g ID=Lus10004966.BGIv1.0 annot-version=v1.0 MGNCMKEDRFFDSREEMSDFAAAGGVGNFLIWTDRNLDSVQDRRHSFLTWMDLSSDTVSDSEALQSGVEIDNGGGGAIFRSCDSEDHDGFCSDNTNLSRA TSFHSAEARESFQDKDFVCKIRNLDDGRELVVEELDQDGIFGKFREVGSANQSLTLEVTN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54200			Transducin/WD40 repeat-like su...		Lus10004966 [exp]	0	1
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10043161 [exp]	9.0	0.7669
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10041536 [exp]	24.4	0.7643
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006303 [exp]	24.7	0.7604
AT5G05340			Peroxidase superfamily protein...		Lus10030149 [exp]	29.3	0.7568
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032621 [exp]	34.3	0.7536
					Lus10039496 [exp]	38.5	0.7520
AT2G24960			unknown protein		Lus10042421 [exp]	40.8	0.7517
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	46.6	0.7513
					Lus10015488 [exp]	51.2	0.7437
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	54.6	0.7460

Compare expression of checked genes

Lus10004966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.