Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29040 556 / 0 Exostosin family protein (.1) AT2G20370 527 / 0 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT4G13990 490 / 6e-169 Exostosin family protein (.1) AT2G32750 487 / 1e-167 Exostosin family protein (.1) AT2G31990 432 / 1e-146 Exostosin family protein (.1) AT2G32740 429 / 2e-145 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT5G62220 351 / 1e-114 ATGT18 glycosyltransferase 18 (.1) AT5G41250 343 / 4e-111 Exostosin family protein (.1) AT1G63450 335 / 1e-106 RHS8 root hair specific 8 (.1) AT1G68470 322 / 5e-104 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001578 [exp] 1070 / 0 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10016532 [exp] 741 / 0 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 532 / 0 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10022862 [exp] 530 / 0 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10006694 [exp] 513 / 4e-177 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10010677 [exp] 484 / 2e-166 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10001028 [exp] 478 / 7e-164 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10007426 [exp] 476 / 2e-163 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10007037 [exp] 449 / 2e-153 AT4G13990 540 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032500 [exp] 624 / 0 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 541 / 0 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.014G147800 [exp] 523 / 0 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 519 / 7e-180 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.012G130700 [exp] 354 / 9e-116 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.001G105300 [exp] 334 / 4e-107 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.015G132600 [exp] 329 / 5e-106 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G382200 [exp] 323 / 4e-104 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 317 / 1e-101 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G120800 [exp] 279 / 1e-87 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10004967 pacid=23174836 polypeptide=Lus10004967 locus=Lus10004967.g ID=Lus10004967.BGIv1.0 annot-version=v1.0 ATGGAGATGCCTGTCGGTACCCGCATCAGATTCTGGTATTTCATTTTGGTCATCTTCGTCGTCTGGATCTTCCTCCTCGCCGCCTATTTCTCCAGCACCG TCATCAATGGCGGAGGAGGAGGAAGCCAATCAATCGCCACCGACCGAAAAATCGTCGCCGAGATCCATGAAACAGAGGATCATCAATCATCCTCCTCCTC CGCCGAGGAGCTTTACCCAGTCAATTCCACCGTCGAGAATTTCTTCATCGGCGGCGAGTGGGATAAGTATCTCCAGCAGGAGGAGCAAAACCAACAGAAT AATCCGGCGAAGCCGATCATCCACCGTCACCACCGGCTTAACAACAGGCCCAATACCATTAGGCCCAAACCAGCAGCCACCGTCGTTTCGTTCCCGGCGG CAAAAGATCCCGATGATTCCGATCAATGCTCCGGGAAGTACATCTACGTCCACGAAATCCCGAGCAGTTTCAATTATGACGTCCTGTTACATTGCAGAAC TTTAAGCAAGTGGATGAATATGTGTCCTTATCTATCAAATTTCGGATTAGGTCCTCAAATTCCGAATTCTGACACGAAAGTTGTATCGAATTCCGGATGG TACGAGACGAATCAATTCGCTCTCGAGGTGATATTCCACAACCGGATGAAGCAGTACAAATGCTTGACATCCGATTCGACAAAAGCCTCCGCGATCTTCG TTCCTTACTATGCCGGACTCGAAGTGGCTCGATATCTATGGAGCAATAACCGGTTAATGCGCGATCATTACTCGACCGAGCTGATCAAATGGATTCGGGG AAAACCGGAGTGGGGGAGGATGTTCGGGAGGGATCATTTCCTGGTTGCGGGGAGGATTAGTTGGGATTTCCGGAGATTGACGGAGAAAGACGAAGATTGG GGGAACAAGCTGATGGTTATGCCGGAATCGAAGAACATGACGATGCTCACGATCGAATCGAGTCCGTGGAACGAGAACGATTTCGCGATCCCGTATCCGA CCGATTTCCACCCCTCGAGCGATAATCAAGTGACTGAATGGCAGCGGAGGATGAGGAGGATGAAGAGGAGGATTTTGTTCTCCTTCGCGGGGGCTCCTCG TCCCAATTTGAAGAATTCAATCCGGAATGAGATAATTGAGCAGTGTAAATCGGCGAAAAAGAAGTGCCAGCTGCTCGGCTGCCAACCCGGTTCGAAGAAA TGCGACGATCCGAGCAATTTGTTGAGGATGTTTCAGGGTTCGGTGTTCTGTCTCCAGCCAGCCGGAGACTCGTACACCCGGAGATCGACGTTCGACTCGA TCCTGGCCGGGTGTATCCCTGTCTTCTTCCATCCTGGTTCTGCCTATGTCCAGTATTTATGGCACTTCCCTAAGGATTACACCAAATACTCGGTGTTCAT CCCGGGGGACGAAGTCAAAGAAGGGAACGCAAACATCGAGAGGATACTATCGAGGATATCGAAGCAGAGAGTGGCCACGATGAGGGAGCAGGTGATCAAG CTGATACCAGGGATCGTCTATGCCGATCCCCGGTCAAATTTGGAGAATTTCGAAGACGCGTTCGACATAACGGTGGACGGGGTTTTGGAGAGGATTGAAG GGTTGAGGAAGGATTTGAAGGAAGGGAAGATTTTGGAAGTGAGTGAGGAAGAAGAGGAGACGAACTGGAAGAAGTCGGTTTTCGGAAGTGTCGGAAAGCC TCATCCTTGGGATCATTTCTTCATCAGGGAGAAGGAGTGGAATCATCAGGGTGAGGATGTTAATTTTCGAGCTAATTGA
AA sequence Show only first row Show all	>Lus10004967 pacid=23174836 polypeptide=Lus10004967 locus=Lus10004967.g ID=Lus10004967.BGIv1.0 annot-version=v1.0 MEMPVGTRIRFWYFILVIFVVWIFLLAAYFSSTVINGGGGGSQSIATDRKIVAEIHETEDHQSSSSSAEELYPVNSTVENFFIGGEWDKYLQQEEQNQQN NPAKPIIHRHHRLNNRPNTIRPKPAATVVSFPAAKDPDDSDQCSGKYIYVHEIPSSFNYDVLLHCRTLSKWMNMCPYLSNFGLGPQIPNSDTKVVSNSGW YETNQFALEVIFHNRMKQYKCLTSDSTKASAIFVPYYAGLEVARYLWSNNRLMRDHYSTELIKWIRGKPEWGRMFGRDHFLVAGRISWDFRRLTEKDEDW GNKLMVMPESKNMTMLTIESSPWNENDFAIPYPTDFHPSSDNQVTEWQRRMRRMKRRILFSFAGAPRPNLKNSIRNEIIEQCKSAKKKCQLLGCQPGSKK CDDPSNLLRMFQGSVFCLQPAGDSYTRRSTFDSILAGCIPVFFHPGSAYVQYLWHFPKDYTKYSVFIPGDEVKEGNANIERILSRISKQRVATMREQVIK LIPGIVYADPRSNLENFEDAFDITVDGVLERIEGLRKDLKEGKILEVSEEEEETNWKKSVFGSVGKPHPWDHFFIREKEWNHQGEDVNFRAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29040			Exostosin family protein (.1)		Lus10004967 [exp]	0	1
AT1G26470			unknown protein		Lus10037088 [exp]	2.0	0.6323
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10037510 [exp]	21.6	0.6556
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036714 [exp]	34.1	0.6172
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10022887 [exp]	54.7	0.5866
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013883 [exp]	64.3	0.5730
AT5G42290			transcription activator-relate...		Lus10021820 [exp]	67.5	0.5992
AT5G52390			PAR1 protein (.1)		Lus10012788 [exp]	69.6	0.5851
AT1G01490			Heavy metal transport/detoxifi...		Lus10039285 [exp]	74.9	0.5914
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023453 [exp]	96.0	0.5810
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	97.7	0.5748

Compare expression of checked genes

Lus10004967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.