Plant FIBer expression Database

Lus10004969 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59460 83 / 6e-20 scarecrow-like transcription factor 11 (SCL11) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001576
[exp]
235 / 2e-79 AT5G59460 111 / 2e-31 scarecrow-like transcription factor 11 (SCL11) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G033400
[exp]
138 / 4e-41 AT5G59460 126 / 5e-37 scarecrow-like transcription factor 11 (SCL11) (.1)
PFAM info
Representative CDS sequence
>Lus10004969 pacid=23174810 polypeptide=Lus10004969 locus=Lus10004969.g ID=Lus10004969.BGIv1.0 annot-version=v1.0
ATGGCGAAGCGCGAGATATCTAGTACGCTGAAGAACTTGAAGGTGAGAATCGAATCGAATCATGATATGCAATTGAATTCCATGGTCGATATACATAATT
TATACTGCGGCATCTCAGTTCTGAAGTGGTTATCTGTTGCTGCTATGAAAAGCCGTGTTCTCGACCTTTTCATGCAAAGGGGAGCTGCGAAAGAAGAGAA
ACCCAAACAGAAAGAAGAAGAAGAGGTTAAGCCCAATGGAAACTTTTTCTCTCGTGGAGGTGTTAGAAAGTGTGTGGTAGTAATGGAAGGTGATCCCCAT
CCAGGAGCAGTTATAGGCAGGATGTCATTTCGAAGCTTCAATCCTTCCGTCGATAAACTGAATGGAGTAGCAACAAACTCTGAAGAAGCAGCAGGTCAGG
CAGCAAACTCATCTGCTAGAGAAAATGGATCGTCGGCGAATGGAGAGAAGGTCACACCAGATTCCGACCAGAAGAGGAAACAGCCTAATGCAGTTTCGGA
AATGGAGGACTCAAACGCTACGCCAAGAGGCGCTGAAGGTGGCGAGGGGTCGTCAAGGAATAACAAGAAAGGTTCGTTCAGGCAGAAACGGCAGAAGCTG
GACTTCAACGCGCTTAGAGCGAAAACTCGGAACAACTGA
AA sequence
>Lus10004969 pacid=23174810 polypeptide=Lus10004969 locus=Lus10004969.g ID=Lus10004969.BGIv1.0 annot-version=v1.0
MAKREISSTLKNLKVRIESNHDMQLNSMVDIHNLYCGISVLKWLSVAAMKSRVLDLFMQRGAAKEEKPKQKEEEEVKPNGNFFSRGGVRKCVVVMEGDPH
PGAVIGRMSFRSFNPSVDKLNGVATNSEEAAGQAANSSARENGSSANGEKVTPDSDQKRKQPNAVSEMEDSNATPRGAEGGEGSSRNNKKGSFRQKRQKL
DFNALRAKTRNN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G59460 scarecrow-like transcription f... Lus10004969
[exp]
0 1
AT5G51510 unknown protein Lus10027200
[exp]
1.0 0.9285
AT4G35980 unknown protein Lus10028436
[exp]
3.0 0.9135
AT2G23940 Protein of unknown function (D... Lus10041903
[exp]
3.5 0.9068
AT1G15340 MBD10 methyl-CPG-binding domain 10 (... Lus10019406
[exp]
4.2 0.9154
AT5G12240 unknown protein Lus10026824
[exp]
4.5 0.8947
AT2G37120 S1FA-like DNA-binding protein ... Lus10023177
[exp]
5.3 0.8632
AT5G09830 BolA-like family protein (.1) Lus10020861
[exp]
5.3 0.8878
AT3G18760 Translation elongation factor... Lus10038301
[exp]
5.5 0.8921
AT1G12390 Cornichon family protein (.1) Lus10004320
[exp]
6.7 0.8740
AT3G62450 unknown protein Lus10021958
[exp]
7.3 0.8713

Lus10004969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.