Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21270 323 / 4e-110 UFD1 ubiquitin fusion degradation 1 (.1.2.3) AT2G29070 320 / 7e-109 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT4G38930 304 / 1e-102 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT4G15420 101 / 2e-23 Ubiquitin fusion degradation UFD1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001575 [exp] 362 / 1e-125 AT2G21270 259 / 3e-85 ubiquitin fusion degradation 1 (.1.2.3) Lus10018057 [exp] 315 / 6e-106 AT2G21270 480 / 2e-171 ubiquitin fusion degradation 1 (.1.2.3) Lus10042053 [exp] 301 / 1e-100 AT2G21270 420 / 4e-148 ubiquitin fusion degradation 1 (.1.2.3) Lus10029298 [exp] 157 / 6e-44 AT2G29070 195 / 7e-59 Ubiquitin fusion degradation UFD1 family protein (.1.2) Lus10031538 [exp] 104 / 1e-24 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10015140 [exp] 103 / 4e-24 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G242200 [exp] 365 / 1e-126 AT2G29070 403 / 6e-142 Ubiquitin fusion degradation UFD1 family protein (.1.2) Potri.004G163200 [exp] 331 / 5e-113 AT2G21270 487 / 7e-175 ubiquitin fusion degradation 1 (.1.2.3) Potri.009G124900 [exp] 325 / 2e-110 AT2G21270 485 / 4e-174 ubiquitin fusion degradation 1 (.1.2.3) Potri.014G156300 [exp] 102 / 6e-24 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [flax] [poplar] Cdc48_2-like PF03152 [flax] [poplar] UFD1 Ubiquitin fusion degradation protein UFD1
Representative CDS sequence Show only first row Show all	>Lus10004970 pacid=23174843 polypeptide=Lus10004970 locus=Lus10004970.g ID=Lus10004970.BGIv1.0 annot-version=v1.0 ATGGATCGCCATGAAACTTCAAGTGCAACATTTGAGCAGTACTATCGCTGCTACCCTGTTTCTTTCCTTGATAAGCTAGCTAGGTTGCTAAATTTGAACT CAATTCCACTGTTTTTGCAGCCTCATCTGGAGAAAGGAAACAAAGCTAAGCTTCATATTGATTACCCTATGCTATTTGAACTCCACAACCCTGCTGTTGA GCGGGTGACGCATTGCGGAGTTCTGGAGTTCGTCGCGGAAGAGGGTCTCATCTACTTGCCTTACTGGATGATGGAGAACATGCTCCTGCAAGAAGGTGAT CTTGTGCAGATGAGAAACGCCAGCCTCGAAAAGGGAACTTATGTCAAGTTGCAGCCGCATTCGAAGGACTTCTTGGATGTTTCCAACCCCAAAGCAATAT TGGAGACTTCCTTGAGGAATTACTCTTGTCTGACGACTGGCGACACCATCATGGTTGCGTACAACAACAAGAAGTTCTACATCAATATCGTCGAGACTAA ACCTTCTTTCGCAGTGAGCATTGTCGAAACGGATTGTGAAGTGGATTTCGCTCCGCCTCTTGACTATAAAGAGCCTGAGAAACCCGCGGTTTCTTCGAAA AAGCCGAACAAGGCGCCACCTGCAGATGTAGAGGAGGAGCCTCCTTTGAAGAGGAAGAAGGTTGATGCTTTTAGCGGTTCAGCTAGGCGTCTCGATGGGA AAGAATCAACAGAACCAGCAGCTTCATCAACTACAAGTTCCGCAGTCGAACACTGCCAAATTGAAGCGAAAGAGCACCGCAACTATTCCAAGTCATCCGC AGTCCCTTATGCATCGGCCCGACAGCAGTCTGGGAAACTGATCTTCGGCGCGAACAAAAACCAGTCCGGAGATGAAACCGCAAGTGTAAGCATCGTCTTC AATGTTTGTGTATATGCCGTTAAAACAAAACTCCTCTCGCGTATATGCCGTGAAGCCGTTAAAACAAAACTCCTCTTGCTTATGTCTTCCTGCGCCTTCT TTCTTGCAGACCACGGTAAAGAAGGGAAGTGA
AA sequence Show only first row Show all	>Lus10004970 pacid=23174843 polypeptide=Lus10004970 locus=Lus10004970.g ID=Lus10004970.BGIv1.0 annot-version=v1.0 MDRHETSSATFEQYYRCYPVSFLDKLARLLNLNSIPLFLQPHLEKGNKAKLHIDYPMLFELHNPAVERVTHCGVLEFVAEEGLIYLPYWMMENMLLQEGD LVQMRNASLEKGTYVKLQPHSKDFLDVSNPKAILETSLRNYSCLTTGDTIMVAYNNKKFYINIVETKPSFAVSIVETDCEVDFAPPLDYKEPEKPAVSSK KPNKAPPADVEEEPPLKRKKVDAFSGSARRLDGKESTEPAASSTTSSAVEHCQIEAKEHRNYSKSSAVPYASARQQSGKLIFGANKNQSGDETASVSIVF NVCVYAVKTKLLSRICREAVKTKLLLLMSSCAFFLADHGKEGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10004970 [exp]	0	1
AT4G39230			NmrA-like negative transcripti...		Lus10026350 [exp]	1.0	0.8953
AT5G09680		RLF	reduced lateral root formation...		Lus10019013 [exp]	2.0	0.8367
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	2.4	0.8598
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	5.9	0.8347
AT1G19270		DA1	DA1 (.1)		Lus10016298 [exp]	6.6	0.7842
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	18.4	0.8088
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	19.0	0.8174
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	22.8	0.7872
AT3G47570			Leucine-rich repeat protein ki...		Lus10043368 [exp]	27.8	0.8240
AT5G46250			RNA-binding protein (.1.2.3)		Lus10023315 [exp]	28.0	0.8381

Compare expression of checked genes

Lus10004970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.