Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59480 392 / 1e-138 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G02230 327 / 7e-113 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59490 296 / 4e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G62040 279 / 1e-94 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G32150 234 / 1e-76 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016518 [exp] 465 / 2e-167 AT5G59480 383 / 5e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10040786 [exp] 460 / 7e-165 AT5G59480 382 / 4e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10001574 [exp] 457 / 8e-162 AT5G59480 323 / 4e-109 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10024382 [exp] 335 / 8e-116 AT5G02230 394 / 5e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10010848 [exp] 332 / 1e-114 AT5G02230 394 / 7e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10028107 [exp] 322 / 1e-110 AT5G02230 369 / 4e-129 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10038016 [exp] 268 / 3e-89 AT3G62040 363 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009256 [exp] 266 / 3e-89 AT3G62040 364 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004914 [exp] 234 / 1e-76 AT2G32150 338 / 6e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G242300 [exp] 424 / 4e-151 AT5G59480 409 / 2e-145 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.009G033500 [exp] 348 / 4e-120 AT5G59480 361 / 4e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.006G086900 [exp] 343 / 5e-119 AT5G02230 402 / 4e-142 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G185300 [exp] 277 / 6e-93 AT3G62040 360 / 5e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G110800 [exp] 275 / 2e-92 AT3G62040 356 / 8e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G089300 [exp] 238 / 4e-78 AT2G32150 317 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G151700 [exp] 229 / 1e-74 AT2G32150 319 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004971 pacid=23174854 polypeptide=Lus10004971 locus=Lus10004971.g ID=Lus10004971.BGIv1.0 annot-version=v1.0 ATGGAGTACGGAAACAGTGAGCATCAAGACGGTTTGAGCCAGAAATATGATTGTCTCCTTTTCGATCTGGATGACACTCTTTATCCATTGAGTTCTGGTT TAGCTCCACAAGTCGCCAAAAACATTCAAGAGTATATGATTGAGAAGCTTGGCATCCCTCAAGATAAAGTAACAGCATTGTGTCTTTCTCTTTACAAATA CTATGGCACTACAATGGCTGGTCTCCGGGCGATCGGTTTTAAGTTCGATTATGATGACTGCCACAGTTTTATCCATGGACGATTGCCTTACGATACACTG AAGCCGGATCCTGTTCTCAAAAGTCTCTTGAACAGCTTGCCCATCCGGAAAGTGATATTCACCAACGCGGATAAAGCACATGCCGAGAAGGCGCTCAGCA GGCTAGGGTTGGAGGATTGCTTCGAACAGATACTCTGCTTCGAGAGCTTAAACGACTCCACCAAAGGGAATGAAACCGTGGACGAAGATTCAACTGAAAT CTTCGATATCAATGAGTACAGTGCTTCTCCAAATGCTGGCTTATCACTTCCCAAAACGCCTGTCGTTTGCAAACCTTTCGATGAAGCTTATGAGGAGGTT TTCAAGCTTGCTTCCATCAACCCTCATCGCACGGTGTTCTTCGATGACAGTCTTCGGAATATCCAAACTGGAAAAAGATTGGGGCTTCATACCGTGTGGG TTGGTACTTCGAGTCGAACCGAAGGTGTAGACCATGCATTGGAGAGTATCCATAACATCAAGGAAGCATTGCCGGAGCTGTGGGATATGGCAGCCATGGA CAAAACAGAAGGACTCAGTTACTCCACAAAGGTCGCAATCGAGGCAGAAGTGCAGGCCTAA
AA sequence Show only first row Show all	>Lus10004971 pacid=23174854 polypeptide=Lus10004971 locus=Lus10004971.g ID=Lus10004971.BGIv1.0 annot-version=v1.0 MEYGNSEHQDGLSQKYDCLLFDLDDTLYPLSSGLAPQVAKNIQEYMIEKLGIPQDKVTALCLSLYKYYGTTMAGLRAIGFKFDYDDCHSFIHGRLPYDTL KPDPVLKSLLNSLPIRKVIFTNADKAHAEKALSRLGLEDCFEQILCFESLNDSTKGNETVDEDSTEIFDINEYSASPNAGLSLPKTPVVCKPFDEAYEEV FKLASINPHRTVFFDDSLRNIQTGKRLGLHTVWVGTSSRTEGVDHALESIHNIKEALPELWDMAAMDKTEGLSYSTKVAIEAEVQA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10004971 [exp]	0	1
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10021670 [exp]	13.7	0.8249
					Lus10020461 [exp]	59.2	0.8365

Compare expression of checked genes

Lus10004971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.