Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59500 334 / 2e-112 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001571 [exp] 631 / 0 AT5G59500 410 / 3e-142 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G242400 [exp] 380 / 5e-130 AT5G59500 451 / 4e-158 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1) Potri.009G033700 [exp] 373 / 2e-127 AT5G59500 439 / 1e-153 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF04140 [flax] [poplar] ICMT Isoprenylcysteine carboxyl methyltransferase (ICMT) family
Representative CDS sequence Show only first row Show all	>Lus10004974 pacid=23174842 polypeptide=Lus10004974 locus=Lus10004974.g ID=Lus10004974.BGIv1.0 annot-version=v1.0 ATGGAGAGTTCAACGTCGATGCTTCTCAGTTCGCAGTCGAGCTCACTGGGTTTAAGCTTACGAAGAAATTCCGCTGCAGTGAATCAAAATTTCTCTTTGG GGCATTTCAACAAACACTTGGAGTGCCGTCGAACGGCTAGCACAAGCTTTAAATCCATTGGTAATCCGCTACTTTCTTCTTCGTTTTCAGTAAAGCAGAA GGTACCTTTGCTGAAAATAACGAGGACCCATTTCGTTTCTCCACTCAGAAGCTCTTCAACAAGTTCCGACTCTTTCAATGCCCAACCACTGCTGGAACGC TTCAAGGACTTATCTTTTGAGAACTTCAAGAGAGGGGTAATGGAAGCAACTCCTTTCCAGATTGTCAAGTGGTTAATTATCTTGGCGGTTCCAATTTCTG CAGTGAAATGGACTGCAAACATGCTGGTGAGTCCCTTATCTTGGTCATACTTAACCATGGCTTGGGTGTTCTGGCCATGGATGTTAGCTATCTCGTTAGC AATATATGGAATTTACTGCTCATATCGATACACAAAAGGAGAAGCGACCACTTTCGAACAACTTGCAACTGTTACTTCATTCATCACTTGGCTAACTGTG GTACCTCCAGCACATTTCAATGGCTTCGTGGAAGGATGGCCAGTTGTGTTCTTCTTCGTGTATCATTACTTCTTCTTCCTGAACGTTAGCATCAGAGAAC GTCTGTATGGAGATTACTACGAACGTCCACATGATTCAAAGTGGGACGATCTGAATCCTCCCAATTCGACACGAGCTTTGTTCTGTATTGGAGCCATGGT TTGTCATTGGTTTGCAGCTTTCGAATCCCCCGAGCTACATTTGATCCCCGGTGGATGGAGCAATGTCGTTGTTTGGATGCTGATACTTGGAGCTATACTG ATGCATCACAATGCAACGTCTTACCTCGCCAAGTATTCCGAGAAGGTGGTGGTTCCGACCTCTGTCGTGCAGTTCGGGCCGTATAGATGGGTCAGGCATC CAATATACTCGTCCACGATTCTTCTGTTTGCATCGTATTTCGCGGCTCTGCGTGCCCTTTTGAGCTTGCTGTTCGTGGTGGCGGTGTCTGTGGTGTTTTA CGACAAGAAGGCCAAGTTGGAGGAGGCTCTGATGATTGAGAGCTTCGGAGAGAGTTATGTGAAGTACATGGATAGAGTTCAGTACAAATTCATTCCTTTT GTTTGGTAG
AA sequence Show only first row Show all	>Lus10004974 pacid=23174842 polypeptide=Lus10004974 locus=Lus10004974.g ID=Lus10004974.BGIv1.0 annot-version=v1.0 MESSTSMLLSSQSSSLGLSLRRNSAAVNQNFSLGHFNKHLECRRTASTSFKSIGNPLLSSSFSVKQKVPLLKITRTHFVSPLRSSSTSSDSFNAQPLLER FKDLSFENFKRGVMEATPFQIVKWLIILAVPISAVKWTANMLVSPLSWSYLTMAWVFWPWMLAISLAIYGIYCSYRYTKGEATTFEQLATVTSFITWLTV VPPAHFNGFVEGWPVVFFFVYHYFFFLNVSIRERLYGDYYERPHDSKWDDLNPPNSTRALFCIGAMVCHWFAAFESPELHLIPGGWSNVVVWMLILGAIL MHHNATSYLAKYSEKVVVPTSVVQFGPYRWVRHPIYSSTILLFASYFAALRALLSLLFVVAVSVVFYDKKAKLEEALMIESFGESYVKYMDRVQYKFIPF VW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59500			protein C-terminal S-isoprenyl...		Lus10004974 [exp]	0	1
AT5G41270			unknown protein		Lus10030018 [exp]	1.7	0.8777
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Lus10009860 [exp]	2.4	0.8580
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	5.8	0.8762
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10041329 [exp]	6.3	0.8676
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	6.9	0.8758
AT3G51140			Protein of unknown function (D...		Lus10041816 [exp]	8.9	0.8617
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10003741 [exp]	9.9	0.8401
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041327 [exp]	11.0	0.8037
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10036843 [exp]	13.0	0.8268
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10012512 [exp]	15.8	0.8312

Compare expression of checked genes

Lus10004974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.