Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29200 924 / 0 APUM1 pumilio 1 (.1) AT2G29140 916 / 0 APUM3 pumilio 3 (.1) AT2G29190 900 / 0 APUM2 pumilio 2 (.1.2) AT3G10360 620 / 0 APUM4 pumilio 4 (.1) AT3G20250 474 / 4e-152 APUM5 pumilio 5 (.1) AT4G25880 428 / 9e-136 APUM6 pumilio 6 (.1.2.3) AT1G78160 191 / 3e-51 APUM7 pumilio 7 (.1) AT1G22240 181 / 1e-48 APUM8 pumilio 8 (.1) AT4G08840 164 / 2e-42 APUM11 pumilio 11 (.1) AT5G56510 164 / 2e-42 APUM12 pumilio 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001567 [exp] 1689 / 0 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10040782 [exp] 1164 / 0 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10016513 [exp] 1149 / 0 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10002708 [exp] 848 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10038706 [exp] 715 / 0 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10037976 [exp] 711 / 0 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10000516 [exp] 600 / 0 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10033353 [exp] 482 / 1e-155 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 484 / 3e-155 AT3G20250 880 / 0.0 pumilio 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243400 [exp] 1085 / 0 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.009G034900 [exp] 1078 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.008G058300 [exp] 863 / 0 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.010G201100 [exp] 855 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.008G036500 [exp] 563 / 0 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 550 / 2e-180 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 491 / 5e-158 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.006G165100 [exp] 488 / 3e-157 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G009900 [exp] 479 / 1e-153 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 198 / 5e-53 AT5G56510 497 / 4e-168 pumilio 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat CL0020 [flax] [poplar] PF07990 [flax] [poplar] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Lus10004976 pacid=23174841 polypeptide=Lus10004976 locus=Lus10004976.g ID=Lus10004976.BGIv1.0 annot-version=v1.0 ATGCTGAAGAACAGATCGTCATTGAGTGCAGCATTGATCAGCCTTAGAAGGAGGCCGATGGTGGGAGGAGCTAGTGAAGGATCATCATTTGGTGATGATT TAGAGAAGGAAATAGGGTTTATGCTGAACAGTAGACAAGAAGAAGAAGCTAATGACGATTTTGAAAGGGAACTGAATTTGTACAGAAGTGGTTCTGCTCC TCCGACTGTGGAAGGTTCACTCAATGCCGTCGGCGGCTTGTTTGGCGGCGGCGAGGAGCTCAGGTCTGATCCAGCTTATTCTGCTTACTATTACTCAAAC GTGAATATGAACCCCAGGTTGCCTCCTCCTTTGATGTCCAAGGAGGATTTGAGGTTCTCTCAGAGACTGAAGGGAGGAGGGAGTTCAGTTATAGTTGGTG GGATTGGTGATAGGAGGAATGTAAGTAGTAGTGGTAGGGCAATGCCTCCTGGTTTTGAGTCGAGGAAGGTGGAGAACGGAAGTTTCGATTCGAAGAAGAA GGTGGTTTCGAATTCTAATGAATGGGGTGGTGATGGACTTATAGGGATTAAGCAGAAGAGTCTTGCGGAGATCTTTCAGGACAACATAGCTCATGTGACT CCATCCTCGGGCCACCCTTCTCGGCCATCCAGTCGAAATGCGTTTGGTGAACATGCCGAGAGCATTGGTGCAGCTGAGGCTGATCTAGCACACTTACGAT CCGGTTCAAATGGTCAAGGCCAAGCTTCATCGTATTCTTATGCTGCTGTTCTCGGCTCTTCTTTGTCGAGGAGCAATACCCCAGATGCTGAACTAATTAC TAGGGCTCCCAGTCCTTGTCCTCCTACACCTATAGGGCAAGGTAGAAATTCGACATCTGAAAAGCGAGGCGCTGCCACTGCTTCTACTAATGCATTTAGT AATGGTGTTCCGACCGGTTTGAGTGAGTCTGAAGATCTAGTGGCTGCTTTAACTGGTATGAACTTGTCTGCAAGAAATGGCATAGAACGGGGTGCTAATA ATCATCAGAACTATTTGTTTGGTCAGCAAAATCATGTGAATCAAGATGCATACTTTAAGAACTCGGACTCCATGCGTTCACAAATGCTGTATGCCGATTT TAGCGAGAGCAATGGAGGTCGTTCAGACCTCAACAATGGCTCTCCTTATGGGGAAAGGCGGGTTGACCCCTTGCAAAAGTTGGATCGTTGGCATGGTAAT TCGTCACTTCTGAACTACGGAATGGGCGAGGGATATCCTGTTAACCCGTCATTGGCTTCTGAGTCACGTAGTTATGGAAGACTGGGGAGTCCTATTAATG CGAGAAGTGGTGCTCCTCCTCAGGCTCCGTACGTGGATCCGCTGTATCTCCAGTACTTGAGGAGTCCTGAGTATGCTGCATCGCAACTTTCGAGTCTTGG TGATCCGAACTCTTATGTGAACTTACTCGAACTTCAGAAAGTGTATGCTGCTTATGGAAATGCTAAGTCTGGCAGTTCTAACCTCCATAACTACTATGGA AATGCTGCTGCTTATGGTATTGGCATGTTATATCCCGGGAGTCCTATCGCAAGTCCGGTCAGTCCATTAAGACATAATGATATGAATACGAGGTTTGCTT CCGGTATTAGGAGCTTGGGTGGTGGTGGTGGTGGTATCATGAGTCATTGGCGCTTGGATGGTGGACCGATGATGGATGAAAGTTTTGCTTCTTCGCTTCT TGAGGAGTTCAAGAGCAACAAAACCAAGTGTCTCGAACTTTGCGACATTGCTGGCCATGTCGTTGAATTCAGTGCTGATCAGTACGGGAGCCGATTTATC CAACAGAAGCTGGAGACAGCAACAGTTGATGAGAAGACTCTAGTGTACAAGGAAATCATGCCACAAGCTCTTGCTCTGATGACTGATGTGTTTGGTAATT ACGTGATCCAAAAGTTTTTCGAGCATGGACTGCCATCACAGAGACGGGAACTAGCTTGCAAGCTACCAGGACATGTTTTGTCTCTTAGTCTTCAAATGTA TGGATGTAGAGTGATTCAGAAGGCAATCGAGGTTGTGGACCTTGACCAGAAGATCCAAATGGTTGGAGAGCTGGAGGGCCACGTTATGCGATGTGTTCGC GATCAGAACGGGAATCACGTCATCCAGAAGTGCATCGAGTGTGTTCCCGAGGAAAATATCCAGTTTATCGTCACGACGTTCTTCGATCAAGTAACGACCC TCTCCACCCATCCTTACGGTTGCCGTGTGATACAGAGAATTCTTGAACATTGCTTAGACCCCAAAACACAGAGTAAAGTCATGGAAGAGATTCTGGGAGC TGTCAGCATGTTAGCACAAGATCAATATGGCAATTATGTTGTTCAGCATGTATTGGAGCATGGAAAGCCTTACGAACGATCGACGATCATAAAGGAGTTA GCAGGGAGGATAGTCCAGATGAGTCAGCAAAAGTTTGCTTCCAACGTCGTAGAGAAGTGCCTGACGTTTAGTGGCCCAGATGAACGCTCGATATTGGTCA ACGAGATGCTAGGCACAACTGATGAGAACGAGCCTCTGCAGGCTATGATGAAAGACCAGTTTGCGAACTATGTGGTGCAGAAAGTGCTCGAAACTTGCGA AGATCAGCAGCGCGAGCTGATAATGACGCGAATCAAAGTCCATCTGAGTGCACTAAAGAAGTATACATACGGGAAGCACATCGTTGCTCGTGTCGAGAAG CTTCTGGCAGCTGGAGGTAAAAAGAAGAACTCAGAAATCACTCTACTGTCCTTCCTTACTGTTTCATTACTTGAAATGGATCTTAAAACACTGCCGTCTT TGCACCGATGCAGAAAGGAGAAGCGCTGCAGTGTCCCTGCACCCTGCACAGACAGCATAGGATGA
AA sequence Show only first row Show all	>Lus10004976 pacid=23174841 polypeptide=Lus10004976 locus=Lus10004976.g ID=Lus10004976.BGIv1.0 annot-version=v1.0 MLKNRSSLSAALISLRRRPMVGGASEGSSFGDDLEKEIGFMLNSRQEEEANDDFERELNLYRSGSAPPTVEGSLNAVGGLFGGGEELRSDPAYSAYYYSN VNMNPRLPPPLMSKEDLRFSQRLKGGGSSVIVGGIGDRRNVSSSGRAMPPGFESRKVENGSFDSKKKVVSNSNEWGGDGLIGIKQKSLAEIFQDNIAHVT PSSGHPSRPSSRNAFGEHAESIGAAEADLAHLRSGSNGQGQASSYSYAAVLGSSLSRSNTPDAELITRAPSPCPPTPIGQGRNSTSEKRGAATASTNAFS NGVPTGLSESEDLVAALTGMNLSARNGIERGANNHQNYLFGQQNHVNQDAYFKNSDSMRSQMLYADFSESNGGRSDLNNGSPYGERRVDPLQKLDRWHGN SSLLNYGMGEGYPVNPSLASESRSYGRLGSPINARSGAPPQAPYVDPLYLQYLRSPEYAASQLSSLGDPNSYVNLLELQKVYAAYGNAKSGSSNLHNYYG NAAAYGIGMLYPGSPIASPVSPLRHNDMNTRFASGIRSLGGGGGGIMSHWRLDGGPMMDESFASSLLEEFKSNKTKCLELCDIAGHVVEFSADQYGSRFI QQKLETATVDEKTLVYKEIMPQALALMTDVFGNYVIQKFFEHGLPSQRRELACKLPGHVLSLSLQMYGCRVIQKAIEVVDLDQKIQMVGELEGHVMRCVR DQNGNHVIQKCIECVPEENIQFIVTTFFDQVTTLSTHPYGCRVIQRILEHCLDPKTQSKVMEEILGAVSMLAQDQYGNYVVQHVLEHGKPYERSTIIKEL AGRIVQMSQQKFASNVVEKCLTFSGPDERSILVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELIMTRIKVHLSALKKYTYGKHIVARVEK LLAAGGKKKNSEITLLSFLTVSLLEMDLKTLPSLHRCRKEKRCSVPAPCTDSIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	0	1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	1.4	0.8969
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	2.4	0.8998
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	3.0	0.8949
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	4.2	0.8829
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	4.7	0.8695
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	6.3	0.8741
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	6.6	0.8318
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	6.6	0.8875
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10029688 [exp]	10.4	0.8257
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10010845 [exp]	11.2	0.8854

Compare expression of checked genes

Lus10004976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.