Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55530 292 / 2e-99 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT4G32600 69 / 7e-13 RING/U-box superfamily protein (.1) AT1G14200 65 / 1e-12 RING/U-box superfamily protein (.1) AT1G80400 66 / 5e-12 RING/U-box superfamily protein (.1) AT2G17730 64 / 9e-12 NIP2 NEP-interacting protein 2 (.1.2) AT1G04790 64 / 2e-11 RING/U-box superfamily protein (.1) AT3G58720 63 / 2e-11 RING/U-box superfamily protein (.1.2) AT4G28890 64 / 3e-11 RING/U-box superfamily protein (.1) AT1G21960 62 / 3e-11 RING/U-box superfamily protein (.1) AT1G74410 61 / 5e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001568 [exp] 395 / 7e-140 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10000513 [exp] 275 / 1e-92 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10002706 [exp] 270 / 2e-90 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10030464 [exp] 67 / 5e-13 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1) Lus10037170 [exp] 67 / 6e-13 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1) Lus10012819 [exp] 67 / 1e-12 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10036757 [exp] 65 / 2e-12 AT1G26800 127 / 1e-36 RING/U-box superfamily protein (.1) Lus10041859 [exp] 65 / 3e-12 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10028406 [exp] 65 / 3e-12 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G034700 [exp] 347 / 4e-121 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.010G201500 [exp] 285 / 1e-96 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 68 / 7e-14 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 68 / 1e-12 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 66 / 1e-12 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 66 / 2e-12 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 66 / 3e-12 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.006G239500 [exp] 66 / 4e-12 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.007G086300 [exp] 63 / 5e-12 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.014G076800 [exp] 63 / 8e-12 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10004977 pacid=23174838 polypeptide=Lus10004977 locus=Lus10004977.g ID=Lus10004977.BGIv1.0 annot-version=v1.0 ATGAGCTTTGTGTTCCGTGGTAGAGGAGGTGACATTGAAAGTGGATTCTCAGGGTTTATGTCTGAACGGCCTACAGTGCGGATTCATGGAGCAGCAGCAG CTCGGCCAGTTAGTTCCAATTCCATGGCGTTTCTCGCCACAATTCTGCTTCTTTTCATGATATTGAACTCTCATCAGATGTCACCAAACTTCCTGCTTTG GTTGGTTGTGGGTGTTTTCCTTATGGCCACTAGCCTGCGAATGTATGCAACCTGCCAACAACTTCAAGCTCAGGCACGGGCACACGCCGCAGCAGCCAGT GGCTTGCTAGGTCACACCGAGCTCCGGTTGCATATGCCCCCATCGATAGCATTTGCTACAAGAGGACGGCTACAAGGACTCAGGCTTCAACTCGCACTTC TTGACCGTGAATTTGATGACTTAGATTATGATGCCCTTAGAGCACTAGACTCTGATAATGTTCCTTCTGCTCATTCTATGAGCGAGGAAGAGATCAATGC ATTGCCTGTTCACAAGTACAAGGTCCCGAGATCAGAGAATAGTAGCGCACCTGTGCCTGAGGCATCTTCCTCGTCAGTTCCAGCTGAGACAAAGCAAGAA CCTGGGAAGGCGGAAGGAAACGCAAAAGCTTCGGAAGACGAATTGACGTGCACAATCTGTTTGGACCAAGTTAGCAGGGGCGAACTTGTTCGAAGCTTGC CATGTTTGCATCAGTTCCATACCAACTGTATTGATCAATGGCTTCGGCAACAAGGAACATGTCCCGTTTGTAAATTTCGTATGGGACCGACCTGGCAGGA TAACCGGGGAAGCGACTCGGATGGTTCGGACACCGTTTAG
AA sequence Show only first row Show all	>Lus10004977 pacid=23174838 polypeptide=Lus10004977 locus=Lus10004977.g ID=Lus10004977.BGIv1.0 annot-version=v1.0 MSFVFRGRGGDIESGFSGFMSERPTVRIHGAAAARPVSSNSMAFLATILLLFMILNSHQMSPNFLLWLVVGVFLMATSLRMYATCQQLQAQARAHAAAAS GLLGHTELRLHMPPSIAFATRGRLQGLRLQLALLDREFDDLDYDALRALDSDNVPSAHSMSEEEINALPVHKYKVPRSENSSAPVPEASSSSVPAETKQE PGKAEGNAKASEDELTCTICLDQVSRGELVRSLPCLHQFHTNCIDQWLRQQGTCPVCKFRMGPTWQDNRGSDSDGSDTV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10004977 [exp]	0	1
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10001568 [exp]	1.0	0.9681
AT5G08060			unknown protein		Lus10021149 [exp]	2.0	0.9454
AT1G44414			unknown protein		Lus10025672 [exp]	3.5	0.9230
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	4.2	0.9379
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10033934 [exp]	4.5	0.9111
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10009422 [exp]	4.9	0.9196
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10032349 [exp]	5.1	0.9000
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10008007 [exp]	5.2	0.9117
AT4G38690			PLC-like phosphodiesterases su...		Lus10025062 [exp]	7.5	0.8474
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	8.5	0.9311

Compare expression of checked genes

Lus10004977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.