Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46740 1090 / 0 MAR1, TOC75-III, TOC75 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) AT4G09080 497 / 8e-173 TOC75-IV, ATTOC75-IV translocon at the outer envelope membrane of chloroplasts 75-IV, TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV, Outer membrane OMP85 family protein (.1) AT1G35860 476 / 1e-164 TOC75-I translocon outer membrane complex 75-I (.1) AT5G19620 108 / 3e-24 TOC75-V, EMB213, TOC75, ATOEP80, OEP80 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) AT3G44160 81 / 4e-16 Outer membrane OMP85 family protein (.1) AT3G48620 54 / 2e-07 Outer membrane OMP85 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001566 [exp] 1244 / 0 AT3G46740 1210 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10016508 [exp] 1106 / 0 AT3G46740 1179 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10040775 [exp] 389 / 1e-130 AT3G46740 471 / 7e-161 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10031839 [exp] 92 / 6e-19 AT5G19620 1030 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10031272 [exp] 88 / 7e-18 AT5G19620 1018 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10013360 [exp] 50 / 4e-06 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10004104 [exp] 47 / 3e-05 AT3G44160 566 / 0.0 Outer membrane OMP85 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072800 [exp] 1131 / 0 AT3G46740 1289 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Potri.003G158100 [exp] 1118 / 0 AT3G46740 1274 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Potri.003G204900 [exp] 116 / 7e-27 AT5G19620 892 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.001G019000 [exp] 110 / 4e-25 AT5G19620 936 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.009G017100 [exp] 80 / 7e-16 AT3G44160 598 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G215500 [exp] 77 / 5e-15 AT3G44160 581 / 0.0 Outer membrane OMP85 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0191 [flax] [poplar] POTRA PF07244 [flax] [poplar] POTRA Surface antigen variable number repeat CL0193 [flax] [poplar] MBB PF01103 [flax] [poplar] Omp85 Omp85 superfamily domain
Representative CDS sequence Show only first row Show all	>Lus10004978 pacid=23174814 polypeptide=Lus10004978 locus=Lus10004978.g ID=Lus10004978.BGIv1.0 annot-version=v1.0 ATGGTTTCGCTCCGGCCAGGTGGAGTCTACACCAAGGCAATGCTACAGAAGGAGCTTGAAACTCTAGCCACCTGCGGAATGTTCGAGAAAGTAGGGATGG AAGGGAACTCAAACGCCGATGGAACCATGAACATCAGGATCTCTTTCACGGAGAGCACATGGCAGTCTGCCGAGAGGTTCAGGTGCATCAACGTCGGGCT GATGAAGCAGTCGAAGCCGATCGAGATGGATGAAGATATGACGGAGAAGGAAAAGATGGAGTATTATCTGAGCCAGGAGGCTGAGTATAAGTCTAGGATT AAGAGAGCGCGTCCGTGTTTGTTGTCGCCTGGTTTGAATAGTGAAGTTTTGCAGATGTTGAGGACTAGTGGGAAGGTGAGTGCTAGGCTGTTGCAGAGGA TTAGGGATAAAGTGCAGAAGTGGTATCAGGATGAAGGTTATGCGTGTGCCCAGGTTGTTAATTTTGGCAACTTGAACACCAAGGAGGTTGTTTGTGAGGT GGTCGAAGGTGATATTACCAAGCTGGTTATTCAGTTCCAGGATAAACTTGGTAATGTTGTTGAAGGGAATACCCAGCTTCCTGTTGTCAGGAGAGAGTTG CCCAGGAAGTTGCGAGCAGGACAAGTCTTCAACATTGAGGATGGAAAACTAGCGCTGAGGAATATAAATGCTTTGTCTTTGTTCTCAAACATTGAAGTGA ACCCAAGGCCTGACGAGAAGAATGAAGGAGGAATCATTGTTGAAATTAAGCTTAAAGAGCTAGAGCCCAAATCAGCTGAAGTTAGTACAGAATGGAGCAT TGTCCCTGGTCGTGGGGGACGGCCCTCACTGGCTTCCATCCAGCCTGGAGGAACTGTTTCGTTCGAACATCGCAATATCAAAGGGCTGAATCGATCAGTG GTCGGCTCGATTACCACAAGCAATTTCTTTTTGCCTCAGGATGATCTTGCCTTTAAGCTTGAATATGCCCATCCGTATCTGGACGGAGTTACCAACTCCC GCAATCGAACTCTTCGCACAAGCTGCTTTAACAGCAGAAAGCTTAGCCCGGTCTTCACCGGCGGGCCAGGGGTCGATGAAGTTCCTCCTATATGGGTTGA TCGAGCTGGCGTGAAAGTTAACATCACAGAGAACTTCACCCGTCAAAGCAAATTCACATATGGACTGGTGATGGAAGAGATAACAACGCGTGATGAAAGC AGCCATATTTCTACCAATGGTCAGAGAGTGTTGCCGAGTGGCGGGATTAGTGCCGATGGGCCACCAACGACTCTCAGCGGTACGGGCATTGACCGGGTGG CGTTCTTGCAAGCTAATATCACTCGTGACAACACTAAGTTCATCAATGGTGCTGTGGTCGGCGAAAGGAACGTCTTTCAGGTGGACCAAGGCCTCGGCGT GGGAAGCAAGTTCCCGTTCTTCAACCGCCACCAGCTAACCGTTACACAGTTCATCCCGCTGAAGGAGGTCGAGGAAGGTGCTGGTAAACAACCACCACCT ATCCTGGTCCTTAATGGCCATTACGGGGGTTGTGTCGGAGATCTTCCGAGCTACGATGCTTTCACACTCGGTGGACCTTACTCCGTCAGAGGCTACAACA TGGGGGAGTTGGGTGCAGCACGAAACATCCTTGAGCTTGGAGCAGAGATAAGGGTTCCGGTGAGGAACACTCATGTGTATGCTTTCGCGGAGCATGGTAA CGATCTCGGAAGTTCCAAGGATGTGAAGGGGAACCCGACGGAGGTGTACAGAAGAAAGGGAAATGGTTCATCTTACGGTGTCGGTGTGAAGCTCGGATTG GTACGAGCAGAGTACGCCGTGGATCACAACACAGGCACTGGCGCATTGTTCTTCCGGTTCGGGGAGCGATATTAA
AA sequence Show only first row Show all	>Lus10004978 pacid=23174814 polypeptide=Lus10004978 locus=Lus10004978.g ID=Lus10004978.BGIv1.0 annot-version=v1.0 MVSLRPGGVYTKAMLQKELETLATCGMFEKVGMEGNSNADGTMNIRISFTESTWQSAERFRCINVGLMKQSKPIEMDEDMTEKEKMEYYLSQEAEYKSRI KRARPCLLSPGLNSEVLQMLRTSGKVSARLLQRIRDKVQKWYQDEGYACAQVVNFGNLNTKEVVCEVVEGDITKLVIQFQDKLGNVVEGNTQLPVVRREL PRKLRAGQVFNIEDGKLALRNINALSLFSNIEVNPRPDEKNEGGIIVEIKLKELEPKSAEVSTEWSIVPGRGGRPSLASIQPGGTVSFEHRNIKGLNRSV VGSITTSNFFLPQDDLAFKLEYAHPYLDGVTNSRNRTLRTSCFNSRKLSPVFTGGPGVDEVPPIWVDRAGVKVNITENFTRQSKFTYGLVMEEITTRDES SHISTNGQRVLPSGGISADGPPTTLSGTGIDRVAFLQANITRDNTKFINGAVVGERNVFQVDQGLGVGSKFPFFNRHQLTVTQFIPLKEVEEGAGKQPPP ILVLNGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRVPVRNTHVYAFAEHGNDLGSSKDVKGNPTEVYRRKGNGSSYGVGVKLGL VRAEYAVDHNTGTGALFFRFGERY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	0	1
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10021677 [exp]	2.0	0.9348
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	2.2	0.9273
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10021678 [exp]	2.8	0.9299
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10035017 [exp]	5.3	0.9289
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10022899 [exp]	7.0	0.9201
AT2G44640			unknown protein		Lus10043347 [exp]	7.3	0.9152
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	7.3	0.9293
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	8.1	0.9091
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10026424 [exp]	10.6	0.9165
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10033938 [exp]	10.7	0.8671

Compare expression of checked genes

Lus10004978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.