Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46750 55 / 9e-08 unknown protein AT4G25580 45 / 0.0002 CAP160 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001565 [exp] 171 / 1e-49 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243900 [exp] 91 / 2e-19 AT3G46750 99 / 2e-22 unknown protein Potri.009G035300 [exp] 89 / 6e-19 AT3G46750 170 / 1e-48 unknown protein Potri.015G143950 [exp] 45 / 7e-05 AT5G52300 92 / 1e-19 RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004979 pacid=23174844 polypeptide=Lus10004979 locus=Lus10004979.g ID=Lus10004979.BGIv1.0 annot-version=v1.0 ATGCCGCATCCGTTGAGAAGTGGATCCATGGCTCAACACGAAGCCATTGCCGCCAGGCATTTAAACAACTCTCCTGTAACCCCGCCCAGCCCCAACATCA AGCAGCTCGTGCGAGGTAAGATCTCGAAACCAAACGGTGTTCCTTTTGCCTTGCTCTGCCTAGCAATAGCGGAACCAGCAGTGAACAAACCTAGGTCGCC GCCCCAAGAACACCGAGGAGAAGCGATGAGATGGCACCCGCCAAACTCGTCATCATCATCATCGTCGTTGCAGCAGCGCGACGCAGATTACGAACACACG CTGCAGCAGAAGAAATCGGTGCTAGCGAAGGTGAAGGAGAAGGCCAAGAAATGGGGGCGATCTCTTAGCAAGAAGAAGCACAACGACGATGGTAGCACGA ACAACAGTAACACTACGCCTTCCTGGGGCGTCAGCTTGGATGATGAAGATGATGATGAACCTGAATACCTCGGAGCTCCATTGTACGAGTCCGAGGTGGC ATCCGGCAGATACAAGAACGTGACACGTCAGCAGCATCAGCATCATCCAGCAATATCATCAGCTCCTTTGGTGTTAGAGAAGCAGGCTTCGTCACGCAAC TTAAGCGCCAGCAGCAGTTTCGATTCTCGCTGCAGGAGCAAGTCACCGACGACCAAAATGAACATCGCGGAAAGCATCGCCGCCGGCAAGCAACCGCAGG TCTCCCCCGTAACGCTAGCCGAAACTCACAAGGAGAAGCCTTCGCCGCCACCACCATCACCACAATCTCATGACGATGCTACAGAAATCATTCCAACCAA GGTTCAAAACGTCAACGTGTCAACCCCAGGAGCATCATCGTCGTTTTCACGACCACTACGACAAGAAGCAGCAACGGCAGGGGCGATCAAAGCAGCACCC GCAGCAGCTCCGTCGTCTGCGCCAGCTGTGGTTGCTGCTTCGGTGACGTGGAAACATCCGCCAGCTGAAAAGTCTGCACCGGGGCCGTTGAAGCTAGAAG AAGCAGCACCGCCTCCGGTAGCTACGAAGCCGAAGGCAGATTCAGAGCAGCCTAGAGCATATTCTGCACCGGCGCCGGGGGAGGGGGCGGTTCTGGACAC GGGGAGGACGAACAGTGAGCAGATACGGGATAAAGGAGTCTCGGTGAAGGAGTATATAATGAACAAGCTCGAGCCAGGCGAAGATGCCAAGGCGTTTTCG CGAGTTATATCGCAGGCAATGAGTCCGAGGAAAGCTCCTGGAGATGCAGGGGTGGTGGAAAAGGTGAAGGAGGTTGTTTCTTCTCTTTGGCAGGAAGATA CTTCTTCTTCAGATAATTCTGCTTTAGATTCTGCTTCACAATCTGTTTCTTCCCAGTCTAGTACTTCATACCATCCAACTTATTATAACCCTCCATCATC ACCACACATTCCTATATCAACAGACTCTACCGAAGGTATGTTCAGTATTCAGCTCGTGCTTCATTTCCAGTGTTTTTACTCAATATTGTCAAAACCAGAT CGACCGCTAACCGGTGCCTCATCCGGTTCCAGCACAGTGGTTCATCCAAAACCGTCGAAACTGTGCCTGACCGGTGTGCAACCTACGGTCCGGTTCTGA
AA sequence Show only first row Show all	>Lus10004979 pacid=23174844 polypeptide=Lus10004979 locus=Lus10004979.g ID=Lus10004979.BGIv1.0 annot-version=v1.0 MPHPLRSGSMAQHEAIAARHLNNSPVTPPSPNIKQLVRGKISKPNGVPFALLCLAIAEPAVNKPRSPPQEHRGEAMRWHPPNSSSSSSSLQQRDADYEHT LQQKKSVLAKVKEKAKKWGRSLSKKKHNDDGSTNNSNTTPSWGVSLDDEDDDEPEYLGAPLYESEVASGRYKNVTRQQHQHHPAISSAPLVLEKQASSRN LSASSSFDSRCRSKSPTTKMNIAESIAAGKQPQVSPVTLAETHKEKPSPPPPSPQSHDDATEIIPTKVQNVNVSTPGASSSFSRPLRQEAATAGAIKAAP AAAPSSAPAVVAASVTWKHPPAEKSAPGPLKLEEAAPPPVATKPKADSEQPRAYSAPAPGEGAVLDTGRTNSEQIRDKGVSVKEYIMNKLEPGEDAKAFS RVISQAMSPRKAPGDAGVVEKVKEVVSSLWQEDTSSSDNSALDSASQSVSSQSSTSYHPTYYNPPSSPHIPISTDSTEGMFSIQLVLHFQCFYSILSKPD RPLTGASSGSSTVVHPKPSKLCLTGVQPTVRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46750			unknown protein		Lus10004979 [exp]	0	1
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10008689 [exp]	2.4	0.7648
AT5G56790			Protein kinase superfamily pro...		Lus10024111 [exp]	10.7	0.7148
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036781 [exp]	29.0	0.6688
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007545 [exp]	42.4	0.6334
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10017984 [exp]	43.6	0.6213
AT1G13340			Regulator of Vps4 activity in ...		Lus10017591 [exp]	137.3	0.6500
AT5G57510			unknown protein		Lus10009171 [exp]	155.1	0.6352
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008975 [exp]	219.2	0.6165

Compare expression of checked genes

Lus10004979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.