Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 596 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 582 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 575 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 573 / 0 RLK receptor lectin kinase (.1) AT3G45440 567 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 565 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 561 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 560 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 555 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60320 554 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001564 [exp] 1184 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 665 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 664 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 661 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 644 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 643 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 643 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 633 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 622 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G035400 [exp] 770 / 0 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 763 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 734 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 728 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 717 / 0 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 716 / 0 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035701 [exp] 678 / 0 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 652 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 649 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.009G035601 [exp] 643 / 0 AT3G45430 498 / 3e-169 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10004980 pacid=23174839 polypeptide=Lus10004980 locus=Lus10004980.g ID=Lus10004980.BGIv1.0 annot-version=v1.0 ATGGCGCCATCTTTGCTTACTCGACTCCGTATCCTGCTACTCGCTCTCCACCTGGTCTCGGCTCAGGAGGGAAATAACCAGTTCGTCTACAATGGCTTCA CCGGATCAAATCTCACCACCAATGGAATGGCAAGCATCCATCCGAACGGCCTGCTCGAGCTAACCAACACCTCGAAACAACAAATCGGCCACGCCTTCTT CCCCTTCTCCATCGATCTCAACTCTTCTTCGCTCTCCTTCTCCACAACATTCGTCTTCGCCATGGTTCCCGAGACTCCAACGCTCGGAGGCCACGGCATT GCCTTTGTGATATCGCCAACTCCACACTTTGAAGGCGCCATTGCAACTCAGTACCTCGGTCTGTTCAACTCCACCACGATCGGACTTCAATCCAACCACG TGATTGCTGTGGAGCTTGACACGGTTCAGAACCCTGAGTTTGGAGATATCAACAGCAACCATGTTGGTATAGACATCAACAACTTAACATCCATTCAATC TGCTAATGCTGCATACTTCACCGAAGGTGAAGAAAAGGAACTCGAGCTCATCAGTGGAGATCCTATCCAGGTATGGATAGATTACACAGCAAGTAACAAG GAGTTAAACGTAACACTTGCTCCAGTAAGAACAAGCAAACCAGAGAAGCCGCTACTGTCAACAACCGATCTTAATATAGACGTACCGGATCGAATGTACG TTGGTTTCTCATCATCTACAGGCTCAATAGCTAGCCACCACTACATACTCGGATGGAGCTTGGATTTAACTGGAAGCCAGGCTCGAGATCTCGACATCTC GAACCTGCCATCACTTCCACCAGAGAGAAACTCAGGAAACAGATCGTCAGCAAACTTGAAGATTCTACTTCCTGTGGTGATCACAATTCTACTAATCACA TCCATTGCACTTACAGTCTACTTCACAAGGAAGAGATACGAAGAACTCCACGAAGATTGGGAAGAACAGTACGGTCCACAGAGATTCTCCTACAGAGATC TACACAAAGCAACCAAAGGATTCAATCAGATTTTGGGAGCAGGAGGATTCGGAAAGGTTTACAAAGGAACATTACATCCTTCTTCTTCTTCTACTTCTTT TTCTAGCTCTATTACCTCGGATGCTGAAATAGCAGTGAAGAAGATCTCACACGATTCGCGGCAGGGAATGAGGGAGTTTGTAGCCGAGATCGCGACCATG GGAAGGCTACGTCACCGGAACTTAGTCCAGCTGCTAGGATACTGCCGGAGGAAGGGCGAGCTGTTCTTGGTGTACGATCATATGCCTAACGGAAGTCTGG ATAAATTACTGTTCACAAGCGACGGAAATGGAAGCTGCGAGACCCTAAACTGGGAGCAGAGATTCAAAATTTTGAAAGGAGTAGCGGCGGCGCTTCTCTA CCTTCACGAGGAATGGGAGCAAGTGGTGACTCATCGGGACGTGAAGGCGAGCAACGTGCTTCTCGACGCCGATTTCAACGGCCGGTTAGGGGATTTCGGG CTGGCTCGGGTTTACGATCGGGGATCCGACCCGTTGACGACGAGTGTGGTCGGGACGATCGGATATTTGGCGCCCGAGCTGACTAGGACGGGGAAGGCGA CTACAAGTAGTGACGTTTTCGCGTTCGGGGTTTTTATGTTGGAAGTCGCGTGCGGGAGACGGCCTGTGGAGGCACGTGAGGGGGAGGAGGCGGTGGTTTT GATGGATTGGGTTTCCGAGTGCTGGAGGAGAGGCGAGATTTTGGAGACGTGTGATCGGAGATTGGAAGGGTGTTACGCCGCGGAGGAGGTGGAGATGGTT TTGAAACTGGGGTTGATTTGTGCTCATCGGTTGCCGGCGGCGAGACCGACGATGAGGAGGGTGGTGCAGTTTTTGGAGAAAAATGTGGTTTTGCCACCGG AGATTCTGACGGCGGTTGGTGGAGGGGATAGTGGTCGTCGCCAGGATGGTTCTGGAGATTGGATTCTGCAGTTTCGGGATGAGATTTCTGGTTCTTGTTC TTTGTCTGATGGGGATTCGATCATCCGCACGGGTCGGTGA
AA sequence Show only first row Show all	>Lus10004980 pacid=23174839 polypeptide=Lus10004980 locus=Lus10004980.g ID=Lus10004980.BGIv1.0 annot-version=v1.0 MAPSLLTRLRILLLALHLVSAQEGNNQFVYNGFTGSNLTTNGMASIHPNGLLELTNTSKQQIGHAFFPFSIDLNSSSLSFSTTFVFAMVPETPTLGGHGI AFVISPTPHFEGAIATQYLGLFNSTTIGLQSNHVIAVELDTVQNPEFGDINSNHVGIDINNLTSIQSANAAYFTEGEEKELELISGDPIQVWIDYTASNK ELNVTLAPVRTSKPEKPLLSTTDLNIDVPDRMYVGFSSSTGSIASHHYILGWSLDLTGSQARDLDISNLPSLPPERNSGNRSSANLKILLPVVITILLIT SIALTVYFTRKRYEELHEDWEEQYGPQRFSYRDLHKATKGFNQILGAGGFGKVYKGTLHPSSSSTSFSSSITSDAEIAVKKISHDSRQGMREFVAEIATM GRLRHRNLVQLLGYCRRKGELFLVYDHMPNGSLDKLLFTSDGNGSCETLNWEQRFKILKGVAAALLYLHEEWEQVVTHRDVKASNVLLDADFNGRLGDFG LARVYDRGSDPLTTSVVGTIGYLAPELTRTGKATTSSDVFAFGVFMLEVACGRRPVEAREGEEAVVLMDWVSECWRRGEILETCDRRLEGCYAAEEVEMV LKLGLICAHRLPAARPTMRRVVQFLEKNVVLPPEILTAVGGGDSGRRQDGSGDWILQFRDEISGSCSLSDGDSIIRTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53810			Concanavalin A-like lectin pro...		Lus10004980 [exp]	0	1
					Lus10036436 [exp]	1.0	0.9467
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10035673 [exp]	2.0	0.9230
AT3G53810			Concanavalin A-like lectin pro...		Lus10001564 [exp]	3.0	0.8947
					Lus10029450 [exp]	3.2	0.9136
					Lus10027917 [exp]	4.6	0.9015
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	13.2	0.9108
AT3G27210			unknown protein		Lus10035217 [exp]	15.1	0.8541
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10027120 [exp]	18.3	0.8504
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	18.4	0.8944
AT4G21910			MATE efflux family protein (.1...		Lus10039673 [exp]	19.1	0.8859

Compare expression of checked genes

Lus10004980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.