Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07480 155 / 9e-45 Transcription factor IIA, alpha/beta subunit (.1.2) AT1G07470 155 / 1e-44 Transcription factor IIA, alpha/beta subunit (.1) AT5G59230 60 / 9e-11 transcription factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001563 [exp] 327 / 4e-112 AT1G07480 255 / 9e-83 Transcription factor IIA, alpha/beta subunit (.1.2) Lus10016503 [exp] 263 / 5e-85 AT1G07470 349 / 1e-117 Transcription factor IIA, alpha/beta subunit (.1) Lus10040769 [exp] 231 / 2e-73 AT1G07470 354 / 7e-121 Transcription factor IIA, alpha/beta subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G036700 [exp] 202 / 4e-62 AT1G07470 358 / 1e-121 Transcription factor IIA, alpha/beta subunit (.1) Potri.001G244204 [exp] 196 / 5e-60 AT1G07470 343 / 4e-116 Transcription factor IIA, alpha/beta subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03153 [flax] [poplar] TFIIA Transcription factor IIA, alpha/beta subunit
Representative CDS sequence Show only first row Show all	>Lus10004981 pacid=23174830 polypeptide=Lus10004981 locus=Lus10004981.g ID=Lus10004981.BGIv1.0 annot-version=v1.0 ATGGCTGCCACATCCACCACTACTAGCTCCGTTTACATCCACGTCATTGAGGACTTGATCAGCAAGGTCCGCGAGGAGTTCAACGGCGGTCCTGCCGAGT CCGTTCTGGATGAACTCCAAGGCATTTGGGAGATGAAGATGATGCAAGCGGGAGTGATTTCGGGGCCAATAGAGCGAAATTCAGCTCAGAAGCAGGCACC TGGAGGTCCTACTCCAGTCCACGACCTTAATGTACCGTATGAAGGCACTGAGGAGTATGAGACTCCCACTGCTGAGATGCTATTCACTCCTACGCCAATG CAGACGCCATTACCTGCACAGACTCCTTTGCCTGGAACTGCAGACAATTCCCCCATGTACAACATTCCTACTGGAAACAGTAGTGAATATCCTACCCCTT TAAGTGATACTGGTGGTAATAATGGCAATGCAGAGGCTAAACCGGGACGACCTAGCCCATACATGCAACCTCCTTCTCCTTGGATGCAGCAAAGGCCAGC TATCGGTGTTGATGTTAATGTTGCTTATGAGGAAGGGCGGGAAGAGGCTCCCAATCAGCCTCTGATGCAGATAATTTTTCCTGTTTTCATTTCTTCCGCT GCATTAGATCAAGATGGAGCCGGGGATGATGTCCCAGATGATGATGAAGAAGAAGAAGACGAGCCGTTGAATGAGGCTGATGACGATGAAGAAGATCTGG ACGATGTCGACCAAGGAGAGGAGGTGAACACACAGCACCTGGTTCTAGCTCAGTTTGACAAGGTTACTCGAACAAAGAGCAGGTGGAAGTGCATACTCAA GGATGGCATCATGCACATAAACAATAAGGACATTCTCTTCAATAAGGTGGAGTTCTCAGACAACTATTTTAACTTGATCGTCCTACTTGGGGGTTAG
AA sequence Show only first row Show all	>Lus10004981 pacid=23174830 polypeptide=Lus10004981 locus=Lus10004981.g ID=Lus10004981.BGIv1.0 annot-version=v1.0 MAATSTTTSSVYIHVIEDLISKVREEFNGGPAESVLDELQGIWEMKMMQAGVISGPIERNSAQKQAPGGPTPVHDLNVPYEGTEEYETPTAEMLFTPTPM QTPLPAQTPLPGTADNSPMYNIPTGNSSEYPTPLSDTGGNNGNAEAKPGRPSPYMQPPSPWMQQRPAIGVDVNVAYEEGREEAPNQPLMQIIFPVFISSA ALDQDGAGDDVPDDDEEEEDEPLNEADDDEEDLDDVDQGEEVNTQHLVLAQFDKVTRTKSRWKCILKDGIMHINNKDILFNKVEFSDNYFNLIVLLGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07480			Transcription factor IIA, alph...		Lus10004981 [exp]	0	1
AT5G45840			Leucine-rich repeat protein ki...		Lus10025400 [exp]	1.0	0.9259
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	8.7	0.7541
AT1G19835			Plant protein of unknown funct...		Lus10033813 [exp]	9.9	0.5954
AT5G08110			nucleic acid binding;ATP-depen...		Lus10013505 [exp]	13.9	0.7392
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000227 [exp]	14.7	0.6564
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	17.4	0.7060
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	17.4	0.7334
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025414 [exp]	17.5	0.7229
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	18.6	0.7289
AT5G65470			O-fucosyltransferase family pr...		Lus10012732 [exp]	31.6	0.6568

Compare expression of checked genes

Lus10004981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.