Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 630 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 621 / 0 RLK receptor lectin kinase (.1) AT4G02410 620 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 600 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45440 598 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 595 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 592 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 590 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 586 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 585 / 0 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001562 [exp] 1242 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 980 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 976 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 749 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 735 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 657 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 652 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 635 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 634 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G036300 [exp] 723 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 716 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 712 / 0 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 711 / 0 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 710 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 704 / 0 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 700 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 695 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 691 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 686 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10004982 pacid=23174853 polypeptide=Lus10004982 locus=Lus10004982.g ID=Lus10004982.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCTTCTTCTTCAATCCTCCTCTCTACATTTCTACTCCTTCTCAATTTCGCCGATTCAACAAACTTCACCTACAACGGCTTCGCCG GAGCAAACCTAATCACCGACGCCGAGGCCAAAATCCTCCCCGACGGCCTCCTCCAGCTCACCAACCACACTCAGCTAATCACCGGACATGCTTTCCACCG CCAACCAATCACTTTCCCACCCAACTCCTCCCTCTCCTTCTCCACAACCTTCGTCTTCGCCATGGTCCCCGAATCCCCCAGCGCCGGTGGCCACGGAATC GCCTTCACAATCTCCCAAGCCACCGACTTTACCAACGCTGTCGCCAGCCAGCACCTCGGCCTCTTCAACTCCACCAACATGGGCAGCGCGTCCAACCACG TCGTCGCTGTAGAGCTCGACGCGATGCGTAGCCCGGAGTTCCAGGACATTAATGATAATCACGTCGGAATCGATTTAAACACGTTGATCTCCGTCTCCCC CGCCACCGTGTCCTGGATCTCCGACCAGGACGGCGTCAACCGCACCCTCCGCCTCCTCAGCGGCGACAGAATCCAGATCTGGATCCGCTACGATGACTCA GCCAAACAAATGAACGTCACCGTCGCTCCTTTCGGAGTCCCGAAACCTAACCGTCCTCTCATCTCCACCGATCTCGATCTCTCCACTTACTTCGTTGAAT CGATGTACGTCGGATTCTCTTCCTCCACTAGCACCGTCACCAGCGCGCAGTACATACTCGGATGGAGCTTCACCAAATCGGCAGACTCTCATCCTCCGCC GCTGGATCTTCAATCTCTGCCGGTATCTCCACGGCCGGCCAAGGTTCAGAAGAAACTAGGAGCGACGGCGACGGCGGCGATAATAATCCTATCCATCCTC GTCGCCGGAGCTGGAATCGGAACCTACGCCGTTCAATTAAGGAGATACAGAGAGCTGAGAGAAGACTGGGAGAAGGAATACAATCCGGAGCGGCTTTCTT ACAGAGATCTGTACAGAGCAACCCACGGGTTCAAGGAGAAGCAGGTTCTCGGGTCGGGCGGGTTTGGTAAGGTCTACGGCGGAATATTACCGACGTCGAA GATTCAGATCGCGGTGAAGAGAATCTCCCACGATTCGAGGCAAGGGATGAAGGAATTTGTGGCGGAGATCGTTAGCATCGGGAAATTGAGGCATCGGAAT TTGGTGCATCTGCTTGGTTACTGCCGGAGAAAGGGAGAATTGCTGTTGGTTTACGATTATATGCCTAACGGAAGTTTGGATAAACTCTTGTTCTCCGACG AGAAGACGGAGAAGGCGACGGCGAAGACTCTCAGTTGGGCACAGAGGTTTAAGATCGTGAGAGGAGTGGCCGCCGGGTTACTCTACCTCCACGAGGAATG GGACCAGGTGGTCCTCCACCGCGACATAAAGGCCAGCAACATCCTGCTCGACGCTGATCTCAACGGCCGATTGGGCGATTTCGGACTGGCGAGGCTGTAC GACCACGGGACGAATCCGCAGACGACACATGTCGTCGGGACGGTGGGTTACTTGGCACCGGAGCTTTCCCGGCTGGGGAAAGCGACGACGGCGACGGATG TGTACGCCTTCGGAGTGTTCATGCTTGAAGTGGCGTGCGGGAAGCGGCCCATCGACGGGCGGCCAGGAGTGCCGGCGGAGGAGGTGGTGCTGGTGGATTG GGTGATCGACTGGTGGAAGAGAGGTGAAATTACTGCGGCGGCGGATCCAAAAATGGGAGGGGATTACACGAAGGAGGAGATGGAGTGGGTTTTGAAATTG GGGCTTCTATGCTCGCACAATGTGGCGGCGGTCCGGCCGAGTATGCGGCAAGTGATGCAGTACTTGGACGGCGACGCAGAGTTGCCGGCGGTGGATGTTG AAGGAAGTGGGATTGGGGCGTTTGGTATGGGAAGAGGAGGACGAGGGGAGACGTCGGAGTTTGTAATGTCGTTTGCTTCTTCGATGATGGGGAAGGATAC GATGGTCAATTCCTTGTCCAGTGTGGATTCCATCTTGAACGGCGGCCGGTGA
AA sequence Show only first row Show all	>Lus10004982 pacid=23174853 polypeptide=Lus10004982 locus=Lus10004982.g ID=Lus10004982.BGIv1.0 annot-version=v1.0 MASSSSSSSILLSTFLLLLNFADSTNFTYNGFAGANLITDAEAKILPDGLLQLTNHTQLITGHAFHRQPITFPPNSSLSFSTTFVFAMVPESPSAGGHGI AFTISQATDFTNAVASQHLGLFNSTNMGSASNHVVAVELDAMRSPEFQDINDNHVGIDLNTLISVSPATVSWISDQDGVNRTLRLLSGDRIQIWIRYDDS AKQMNVTVAPFGVPKPNRPLISTDLDLSTYFVESMYVGFSSSTSTVTSAQYILGWSFTKSADSHPPPLDLQSLPVSPRPAKVQKKLGATATAAIIILSIL VAGAGIGTYAVQLRRYRELREDWEKEYNPERLSYRDLYRATHGFKEKQVLGSGGFGKVYGGILPTSKIQIAVKRISHDSRQGMKEFVAEIVSIGKLRHRN LVHLLGYCRRKGELLLVYDYMPNGSLDKLLFSDEKTEKATAKTLSWAQRFKIVRGVAAGLLYLHEEWDQVVLHRDIKASNILLDADLNGRLGDFGLARLY DHGTNPQTTHVVGTVGYLAPELSRLGKATTATDVYAFGVFMLEVACGKRPIDGRPGVPAEEVVLVDWVIDWWKRGEITAAADPKMGGDYTKEEMEWVLKL GLLCSHNVAAVRPSMRQVMQYLDGDAELPAVDVEGSGIGAFGMGRGGRGETSEFVMSFASSMMGKDTMVNSLSSVDSILNGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53810			Concanavalin A-like lectin pro...		Lus10004982 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Lus10001562 [exp]	3.2	0.7380
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	6.1	0.8030
AT1G47980			unknown protein		Lus10017081 [exp]	8.1	0.6508
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10022776 [exp]	14.4	0.7591
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10016647 [exp]	20.5	0.6767
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10024991 [exp]	22.8	0.7370
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10027361 [exp]	25.7	0.7182
AT1G25400			unknown protein		Lus10034335 [exp]	26.9	0.7271
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10027120 [exp]	38.8	0.7251
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	39.6	0.7211

Compare expression of checked genes

Lus10004982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.