Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29210 204 / 3e-55 splicing factor PWI domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001561 [exp] 904 / 0 AT2G29210 263 / 1e-75 splicing factor PWI domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G036900 [exp] 232 / 1e-64 AT2G29210 263 / 6e-75 splicing factor PWI domain-containing protein (.1) Potri.001G244600 [exp] 213 / 4e-58 AT2G29210 253 / 1e-71 splicing factor PWI domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01480 [flax] [poplar] PWI PWI domain
Representative CDS sequence Show only first row Show all	>Lus10004983 pacid=23174825 polypeptide=Lus10004983 locus=Lus10004983.g ID=Lus10004983.BGIv1.0 annot-version=v1.0 ATGTCGGGCGGTTTCTTCCGGGGTACGTCGTTTGAGCAGGACAGTCGGTTCTCAAACAAGCAAGCTAAGCTGATGAAGTCGCAGAAGTTTCCTCCCGAGC TGGAACACCTGGTTGATATGACGAAAGTGAAGATGGACGTCGTGAAACCGTGGATTGCTACTCGTGTGACTGAGTTTCTTGGCTTCGAGGATGAAGTTCT TATCAATTTAATTTACGGTACTCTTGACGCCAAGAAAGTTAATGGGAAAGAAGTTCAAATTCAACTGACTGGCTTCATGGAGAAGAACACGGGGAAGTTT ATGAAGGAGCTATGGTCACTTCTTCTAAGTGCACAGAAGAATGCCAGTGGTGTTCCTCAACAGCTTTTGGATGCGAAAGAAGAAGAAGCTCGGCAGAAGC AGGAGGAGAGAGACCGGATAGCTGCTGAAATGCAGAAAAAGAAAGAGAAGGAGAACTTAGACTCCGAGTTGATAAGGCAAAGGAAGATGCTTCTGCAATT ATTTGGGTTCATGTTCTTTACCTCAAACTACTGTAGGACGATGCGGCTGAGACTAAGGCCAACAATGCCTCAATGGATCGTAGCTCGAAGCAGTATGGAT CTTAGCTCGAAGCAGATACAGCTGAAGGGTTCAAATGGTAGACCTGGTGATGAGAAAGAAACAGAAATAAGAAATGGCTCGAGGGGAAGGAGCAGGTCAG GAACTTACTACTTATGTGCTATGTTGTTGCTTTATTCAGTGCATGCTGGGAAAGGCAAAAGCCCAGAAGTGTTTCCAGATCACCTGATGTTCGAGATCGT TCGGTGTCTCCTCAACGGCGAAGAAAGCGGTCATTTACTCCTCAACGGAGACGTTCTCCTCGATTATCTGGGAGGTCATCTTATGCTAGACAAAGATCCA GATCATCAAGTAGTAGGTCGCCTTCTCCAGTTAGGCATAGGTTGCGGTCTCCTTATCGCCGCAGATCACCTTCACCCATTCGGCGCCGCAGATCACCATC ACCACCTATACGGCGGCGCAGATCACCTTCACCCATTCGACGGCGAAGATCGCCTTCACCACTTCGCAGAAGGAATAGATCACGTTCTCCGGTACGACGC CGGAGATCTCCCTCGCCTATCCGGCAACGAAGGTCACCAGCTCCTGTCAGGCGTCGTAGGACCCCTTCACCTCCTAGAAGGCGTAGATCTCCATCGCCAC AGAAGCAGCGTAGATCACCTTCTCCCCCACGTCGTAGATATGAAAGTAAGACGCAAAACTCCATCCCCTTCCCGCCAAACATCACCAGTTCCTACTCGGA GGAGGTCTCCCTCACCGTCTGATTCAAGATCCTCCTCCCCCATCCGGCAAAGGTACCCTTCCCCTACAAGTAGAAGACCTTCTCTTCAATCTTCCAAAGA AAAACCCAGGATTCGGGAAGTATCCTCTCCTGTACGTTCTCAGCGGTCTGGTGCAACGGATACTAAGGAACGAAAGGATTTGAGCCGTAGAATCCCAGCT GTGTTGTCTTCACCTGAACGGTCTCCTGTTCAATCAGGATCTCCACCACCTGTAAAAAAGAGAAGCGACAATGATGTCAGTGGTGAGACTAAATCTAAGC CTTCACATAAGCCATCCGGCAGTAAGCTGAAGGATTCTCCAGTTAAAGCTGAATACAAGAGTAAGCAGCCTCTTGAAACTGGGGTAGGTCATCAAACTAC CGATTCTAGAAGCCACATTAGAGTAGATAAGGGCAAGAGGGAACAAGAAACAAGGAGCAACAAGCCGACTGGAAGAATGGAGCATACTGAAGGTTCAGAG GGTCAGAAGTCGCCGGTGTTTAACGAAGCAGATACACAGAAGACTGTTAAGACTGATAGACGCCAGAAAGCTGATACTAAGGCTGACCATAGCAACAGTG GTGGTAGTAGGCTTGATTCTTATTCAGACCGAAGTGATAAGCACATAATTGAGGGTAAAGAAAAAATAAAGCACAGAAGGTCCTCGCATAGGCTCGAAAC ATCATCAGGCGATGATTACAGCCATGATTCTGAAATCGAGGGAAAGAAAGATAGTAAGAAAAGGAGGAAAGAAGAAAAGAAATTGCGCAAGGAGGACAAG CGCCGCAGACGCGAGGAGCGGCGGCGGAAAAGAGAAGAACGACGGGCCGAGAAGAAGCTGAAACGTAAGGATCGAGACGAAACTAGTTCTTCCGACGACG ATCATGTTGTCGAGAAGAGAAAAAAATCCCATCCAAGTGATGATGAAAAGGATCATTCTGAACAGAAGAAGCTAGAGATTGAGCTAAGGAAGAAGGCGCT TGAATCACTGAAAGCCAAGAAGGGCATAGATCACTAA
AA sequence Show only first row Show all	>Lus10004983 pacid=23174825 polypeptide=Lus10004983 locus=Lus10004983.g ID=Lus10004983.BGIv1.0 annot-version=v1.0 MSGGFFRGTSFEQDSRFSNKQAKLMKSQKFPPELEHLVDMTKVKMDVVKPWIATRVTEFLGFEDEVLINLIYGTLDAKKVNGKEVQIQLTGFMEKNTGKF MKELWSLLLSAQKNASGVPQQLLDAKEEEARQKQEERDRIAAEMQKKKEKENLDSELIRQRKMLLQLFGFMFFTSNYCRTMRLRLRPTMPQWIVARSSMD LSSKQIQLKGSNGRPGDEKETEIRNGSRGRSRSGTYYLCAMLLLYSVHAGKGKSPEVFPDHLMFEIVRCLLNGEESGHLLLNGDVLLDYLGGHLMLDKDP DHQVVGRLLQLGIGCGLLIAADHLHPFGAADHHHHLYGGADHLHPFDGEDRLHHFAEGIDHVLRYDAGDLPRLSGNEGHQLLSGVVGPLHLLEGVDLHRH RSSVDHLLPHVVDMKVRRKTPSPSRQTSPVPTRRRSPSPSDSRSSSPIRQRYPSPTSRRPSLQSSKEKPRIREVSSPVRSQRSGATDTKERKDLSRRIPA VLSSPERSPVQSGSPPPVKKRSDNDVSGETKSKPSHKPSGSKLKDSPVKAEYKSKQPLETGVGHQTTDSRSHIRVDKGKREQETRSNKPTGRMEHTEGSE GQKSPVFNEADTQKTVKTDRRQKADTKADHSNSGGSRLDSYSDRSDKHIIEGKEKIKHRRSSHRLETSSGDDYSHDSEIEGKKDSKKRRKEEKKLRKEDK RRRREERRRKREERRAEKKLKRKDRDETSSSDDDHVVEKRKKSHPSDDEKDHSEQKKLEIELRKKALESLKAKKGIDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29210			splicing factor PWI domain-con...		Lus10004983 [exp]	0	1
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10026387 [exp]	5.5	0.8880
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	9.7	0.8638
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	11.0	0.8760
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10004893 [exp]	13.6	0.8833
AT5G26910			unknown protein		Lus10037725 [exp]	18.5	0.8855
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10030444 [exp]	21.1	0.8633
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10001356 [exp]	25.7	0.8539
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Lus10038094 [exp]	30.9	0.8289
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	32.2	0.8503
AT3G15120			P-loop containing nucleoside t...		Lus10013677 [exp]	32.7	0.8306

Compare expression of checked genes

Lus10004983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.