Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59180 324 / 3e-115 NRPB7 DNA-directed RNA polymerase II (.1) AT4G14660 74 / 1e-16 NRPE7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT3G22900 70 / 4e-15 NRPD7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT1G06790 49 / 2e-07 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2) AT4G14520 48 / 4e-07 DNA-directed RNA polymerase II-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001559 [exp] 349 / 4e-125 AT5G59180 331 / 5e-118 DNA-directed RNA polymerase II (.1) Lus10023619 [exp] 71 / 2e-15 AT4G14660 266 / 2e-92 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10023620 [exp] 69 / 1e-14 AT4G14660 205 / 3e-68 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10024250 [exp] 68 / 2e-14 AT4G14660 263 / 5e-91 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10035380 [exp] 50 / 7e-08 AT1G06790 235 / 3e-79 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2) Lus10024251 [exp] 40 / 8e-05 AT4G14660 117 / 1e-34 RNA polymerase Rpb7-like, N-terminal domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G377200 [exp] 333 / 8e-119 AT5G59180 340 / 1e-121 DNA-directed RNA polymerase II (.1) Potri.008G161700 [exp] 77 / 6e-18 AT4G14660 293 / 5e-103 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.010G077300 [exp] 76 / 1e-17 AT4G14660 261 / 3e-90 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.010G077200 [exp] 68 / 3e-14 AT4G14660 171 / 1e-54 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.002G044500 [exp] 41 / 0.0001 AT1G06790 228 / 1e-76 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF03876 [flax] [poplar] SHS2_Rpb7-N SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10004986 pacid=23174817 polypeptide=Lus10004986 locus=Lus10004986.g ID=Lus10004986.BGIv1.0 annot-version=v1.0 ATGTTCTTCCACATTGTTCTTGAGCGGAACATGCAGCTGCACCCTCGCTATTTCGGTCGCAACCTTCGCGATAACCTCGTCTCCAAGCTCATGAAAGACG TCGAGGGAACTTGCGGGGGGGAGGATGGGTTTGTGGTAGCCATAACTGGTATAGAAAGCGTTGGGAAAGGGTTGATCAGAGATGGCACAGGTTTCGTGAC GTTTCCAGTGAAGTACCAGTGCGTTGTGTTCAGACCATTCAAAGGTGAAGTCCTGGAAGCTGTTGTGACCCTGGTAAACAAGATGGGATTTTTCGCAGAA GCTGGTCCGGTGCAGATTTTCGTGTCGAACCATTTGATACCAGATGACATGGAGTTTCAAAATGGAGATATGCCGAACTATACGACTTTAGATGGATCGG TTAAGATCCAGAAGGATAGTGAAGTGCGTCTGAAGTTAATTGGAACCCGTGTCGATGCAACAGAAATCTTCTGCATCGGGACGATAAAGGACGACTTCTT GGGTGTGATCAATGATCCTACTACTACATAA
AA sequence Show only first row Show all	>Lus10004986 pacid=23174817 polypeptide=Lus10004986 locus=Lus10004986.g ID=Lus10004986.BGIv1.0 annot-version=v1.0 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCGGEDGFVVAITGIESVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEVLEAVVTLVNKMGFFAE AGPVQIFVSNHLIPDDMEFQNGDMPNYTTLDGSVKIQKDSEVRLKLIGTRVDATEIFCIGTIKDDFLGVINDPTTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10004986 [exp]	0	1
AT3G18760			Translation elongation factor...		Lus10006729 [exp]	6.9	0.8275
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10033841 [exp]	23.2	0.8079
AT5G50810		TIM8	translocase inner membrane sub...		Lus10022450 [exp]	23.7	0.8084
AT5G02610			Ribosomal L29 family protein ...		Lus10024437 [exp]	27.5	0.7946
AT2G46090			Diacylglycerol kinase family p...		Lus10007917 [exp]	28.1	0.7526
AT4G18100			Ribosomal protein L32e (.1)		Lus10007541 [exp]	28.6	0.7776
AT3G49100			Signal recognition particle, S...		Lus10018775 [exp]	30.9	0.8054
AT5G18790			Ribosomal protein L33 family p...		Lus10012786 [exp]	33.4	0.8041
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10001240 [exp]	34.6	0.7589
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10023730 [exp]	38.9	0.8042

Compare expression of checked genes

Lus10004986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.