Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46790 695 / 0 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 427 / 2e-141 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 423 / 8e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 416 / 7e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 416 / 2e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 414 / 5e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 398 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 394 / 2e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 395 / 5e-131 MEF22 mitochondrial editing factor 22 (.1) AT2G27610 397 / 8e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040504 [exp] 412 / 4e-138 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 414 / 1e-136 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016387 [exp] 402 / 2e-136 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 405 / 1e-135 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 407 / 2e-134 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038741 [exp] 402 / 9e-134 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 401 / 1e-132 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 398 / 2e-132 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028837 [exp] 389 / 4e-132 AT1G11290 650 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G037600 [exp] 712 / 0 AT3G46790 997 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 426 / 9e-144 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G021300 [exp] 424 / 6e-142 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 429 / 7e-142 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 416 / 2e-139 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 412 / 9e-139 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 408 / 1e-138 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G105700 [exp] 411 / 2e-137 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 408 / 7e-137 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 409 / 8e-137 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004987 pacid=23174837 polypeptide=Lus10004987 locus=Lus10004987.g ID=Lus10004987.BGIv1.0 annot-version=v1.0 ATGAGTCTTCTCGGGACTCCGCGTTCCGATCGGTTCACTTATACTTTCGCTCTGAAAGCTTGTTGTGTTAGTACTACTTGTGATCAGAATACAGGGAAGG AGATTCATGCTCATGTTCTTCGCCATGGATATGGCAGATTTGTACATATTATGACTACTTTGGTTGATATGTATGCTAAATTTGGGTGTGTGGGTTATGC AAGTGGTGTATTTGATCAGATGCCGGTGAAGAACGTTGTTTCCTGGAGTGCCATGATTGCTTGCTATGCGAAGAATGGGTTTGGTTTTGAGGCGTTGGAG CTCTTCAAGCGAATGATGATGGTTCGAACCGAAGAAGCTCCGAATTCCGTGACAATGGTGAGTGTTCTGCAAGCTTGTGCTTCCCTTGCAGCTCTGGAGC AAGGGAAGTTGATACACGGATACATTGTCAGGAACCAACTCGACAGCATCTCGCCTGTTATGAGTGCTTTGATCACAATGTATGCAAAGTGCGGGAAGCT CGAAGTAGCAGAACAAGTTTTCGATGGCATGTGTACGAAGAAAGATGTCATATCTTGGAATTCTTTGATTTCGGGGTATGGATCGCACGGGCAAGGGAAG AAAGCGCTCGAGGTTTTCAACGAGATGATCAGGTGCGGTGTGTCGCCTAGTCCTGTTTCGTTCGTGTCCGTGTTGGGAGCTTGTAGTCATGCTAATCTCG TGGACGAAGCGAAAGGTTTATTCGATTCAATGAAGAAAGAGCATAAGATGTTTCCTGCTGTAGAGCATTATGCATCAATGGTGGATATATTAGGTAGAGC TAATAGGTTGCAGGAAGCTGTTAGTTTGATCGAGGAGATGCGAATCGAACCAGGACGGAAAGTCTGGGGAGCGTTACTCGGTTCGTGCAGGATCCATTGC AATGTCGAGCTGGCAGAGTGGGCAAGCACGAAGCTTTTCGAGCTCGAGCCTACAAATGCCGGGAACTATGTACTTCTAGCCGATATTTATGCAGAAGCGG GAATGTGGGACGAGGTGAAACGAATCAAAAAGATGATCGAAACGAGGGGACTTCGAAAGCTCCATGGATGGAGTTGGATCGAAGTGAAGAAGCAACTGCA TTCGTTCGTATCAGTAGACGAGTTCAATCCTCGAATGGAGCAGCTCCACGCACTTCTGTTTGAACTATCCTTACAGATGAAGGAGAAGGGTTACGTTTCG CAAACCAATGTGGTGCTGTACGATCTGGAGGAAGAGGAGAAGGAAAGGATTGTGCTTGGACACAGCGAAAAGTTGGCTCTAGCGTTTGGACTCATTAATA CGAGTAATCCAGAGCCAATCCGGATTACAAAGAACCTGAGGCTGTGTGAAGATTGTCATTCGTTTACGAAGTTTATCTCGAAGTTTGCAGGTAAGGAGAT TCTGGTAAGAGACGTGAACAGGTTTCACCATTTTCAGGATGGCGTCTGTTCTTGTGGGGATTTCTGGTGA
AA sequence Show only first row Show all	>Lus10004987 pacid=23174837 polypeptide=Lus10004987 locus=Lus10004987.g ID=Lus10004987.BGIv1.0 annot-version=v1.0 MSLLGTPRSDRFTYTFALKACCVSTTCDQNTGKEIHAHVLRHGYGRFVHIMTTLVDMYAKFGCVGYASGVFDQMPVKNVVSWSAMIACYAKNGFGFEALE LFKRMMMVRTEEAPNSVTMVSVLQACASLAALEQGKLIHGYIVRNQLDSISPVMSALITMYAKCGKLEVAEQVFDGMCTKKDVISWNSLISGYGSHGQGK KALEVFNEMIRCGVSPSPVSFVSVLGACSHANLVDEAKGLFDSMKKEHKMFPAVEHYASMVDILGRANRLQEAVSLIEEMRIEPGRKVWGALLGSCRIHC NVELAEWASTKLFELEPTNAGNYVLLADIYAEAGMWDEVKRIKKMIETRGLRKLHGWSWIEVKKQLHSFVSVDEFNPRMEQLHALLFELSLQMKEKGYVS QTNVVLYDLEEEEKERIVLGHSEKLALAFGLINTSNPEPIRITKNLRLCEDCHSFTKFISKFAGKEILVRDVNRFHHFQDGVCSCGDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	0	1
AT3G24030			hydroxyethylthiazole kinase fa...		Lus10023688 [exp]	2.8	0.7984
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	3.6	0.8526
AT1G67660			Restriction endonuclease, type...		Lus10006437 [exp]	3.7	0.8254
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	3.9	0.8020
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10038795 [exp]	6.6	0.8086
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10041952 [exp]	6.9	0.8202
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10030125 [exp]	7.5	0.7214
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10012974 [exp]	7.7	0.7944
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10029398 [exp]	11.0	0.7837
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10029654 [exp]	11.6	0.7968

Compare expression of checked genes

Lus10004987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.